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    F53B6.4 Major sperm protein [ Caenorhabditis elegans ]

    Gene ID: 172709, updated on 5-May-2024

    Summary

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    Gene symbol
    F53B6.4
    Gene description
    Major sperm protein
    Primary source
    WormBase:WBGene00009959
    Locus tag
    CELE_F53B6.4
    See related
    AllianceGenome:WB:WBGene00009959
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be located in cytoskeleton and membrane. Predicted to be integral component of membrane. [provided by Alliance of Genome Resources, Apr 2022]
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    Genomic context

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    See F53B6.4 in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    4
    Sequence:
    Chromosome: I; NC_003279.8 (8947304..8948711, complement)

    Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene Fungus-Induced Protein Neighboring gene FIP (Fungus-Induced Protein) Related Neighboring gene O-fucosyltransferase family protein Neighboring gene Elf-1_N domain-containing protein Neighboring gene Peptidase_M24 domain-containing protein Neighboring gene tRNA-Lys Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003279.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Germline Maintenance Through the Multifaceted Activities of GLH/Vasa in Caenorhabditis elegans P Granules. Marnik EA, et al. Genetics, 2019 Nov. PMID 31506335, Free PMC Article
    2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Component Evidence Code Pubs
    located_in cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Major sperm protein
    NP_001250938.1
    • Partially confirmed by transcript evidence
    NP_001380117.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003279.8 Reference assembly

      Range
      8947304..8948711 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001264009.2 → NP_001250938.1  Major sperm protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001250938.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9XVN1
      Conserved Domains (1) summary
      pfam00635
      Location:236 → 333
      Motile_Sperm; MSP (Major sperm protein) domain

    2. NM_001392737.1 → NP_001380117.1  Major sperm protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      I2HA90
      Conserved Domains (1) summary
      pfam00635
      Location:194 → 291
      Motile_Sperm; MSP (Major sperm protein) domain
    Nucleotide Protein
    Heading Accession and Version

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