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    spch-1 SPerm CHromatin enriched [ Caenorhabditis elegans ]

    Gene ID: 177877, updated on 7-Sep-2023

    Summary

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    Gene symbol
    spch-1
    Gene description
    SPerm CHromatin enriched
    Primary source
    WormBase:WBGene00007307
    Locus tag
    CELE_C04G2.8
    See related
    AllianceGenome:WB:WBGene00007307
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Involved in male meiotic nuclear division. Located in chromatin. Is expressed in sperm. [provided by Alliance of Genome Resources, Apr 2022]
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    Genomic context

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    See spch-1 in Genome Data Viewer
    Location:
    chromosome: IV
    Exon count:
    2
    Sequence:
    Chromosome: IV; NC_003282.8 (10110818..10111541, complement)

    Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene putative exosome complex exonuclease RRP44 Neighboring gene Paired box protein 5 homolog Neighboring gene pseudo Neighboring gene Nematode Specific Peptide family

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003282.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. 26G endo-siRNAs regulate spermatogenic and zygotic gene expression in Caenorhabditis elegans. Han T, et al. Proc Natl Acad Sci U S A, 2009 Nov 3. PMID 19846761, Free PMC Article
    2. Sperm chromatin proteomics identifies evolutionarily conserved fertility factors. Chu DS, et al. Nature, 2006 Sep 7. PMID 16943775, Free PMC Article
    3. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article
    4. OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes. Kim W, et al. Genetics, 2018 Oct. PMID 30120140, Free PMC Article
    5. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Gene Ontology Provided by WormBase

    Process Evidence Code Pubs
    involved_in male meiotic nuclear division IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of chromatin IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    SPerm CHromatin enriched
    NP_501837.1
    • Product from WormBase gene class spch;
      Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003282.8 Reference assembly

      Range
      10110818..10111541 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_069436.7 → NP_501837.1  SPerm CHromatin enriched [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_501837.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q17626
    Nucleotide Protein
    Heading Accession and Version

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