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    Mir670hg MIR670 host gene (non-protein coding) [ Mus musculus (house mouse) ]

    Gene ID: 414123, updated on 8-Feb-2024

    Summary

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    Official Symbol
    Mir670hgprovided by MGI
    Official Full Name
    MIR670 host gene (non-protein coding)provided by MGI
    Primary source
    MGI:MGI:3041234
    See related
    AllianceGenome:MGI:3041234
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    E530001K10Rik
    Summary
    Orthologous to human MIR670HG (MIR670 host gene). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in testis adult (RPKM 1.4), cerebellum adult (RPKM 0.7) and 6 other tissues See more
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    Genomic context

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    See Mir670hg in Genome Data Viewer
    Location:
    2 E1; 2 51.63 cM
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (93990981..94095446, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (94160636..94265103, complement)

    Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene alkB homolog 3, opposite strand 1 Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:93850845-93851104 Neighboring gene STARR-seq mESC enhancer starr_05171 Neighboring gene alkB homolog 3, alpha-ketoglutarate-dependent dioxygenase Neighboring gene STARR-seq mESC enhancer starr_05172 Neighboring gene hydroxysteroid (17-beta) dehydrogenase 12 Neighboring gene STARR-positive B cell enhancer ABC_E511 Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:94018945-94019238 Neighboring gene predicted gene, 39885 Neighboring gene microRNA 129-2 Neighboring gene microRNA 129b Neighboring gene microRNA 670 Neighboring gene tetratricopeptide repeat domain 17 Neighboring gene STARR-seq mESC enhancer starr_05177 Neighboring gene RIKEN cDNA 2810002D19 gene Neighboring gene inosine triphosphatase (nucleoside triphosphate pyrophosphatase) pseudogene 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
    2. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
    3. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
    4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000068.8 Reference GRCm39 C57BL/6J

      Range
      93990981..94095446 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_001783418.3 RNA Sequence

    2. XR_003953878.2 RNA Sequence

    3. XR_001783417.3 RNA Sequence

    4. XR_003953876.2 RNA Sequence

    5. XR_003953879.2 RNA Sequence

    6. XR_003953877.2 RNA Sequence

    7. XR_866566.3 RNA Sequence

    8. XR_001783420.3 RNA Sequence

    9. XR_001783421.3 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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