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    CRYZL2P crystallin zeta like 2, pseudogene [ Homo sapiens (human) ]

    Gene ID: 730102, updated on 16-Jan-2024

    Summary

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    Official Symbol
    CRYZL2Pprovided by HGNC
    Official Full Name
    crystallin zeta like 2, pseudogeneprovided by HGNC
    Primary source
    HGNC:HGNC:52164
    See related
    Ensembl:ENSG00000293477 AllianceGenome:HGNC:52164
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Ubiquitous expression in duodenum (RPKM 9.7), fat (RPKM 9.1) and 25 other tissues See more
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    Genomic context

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    See CRYZL2P in Genome Data Viewer
    Location:
    1q25.2
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (178006136..178038007, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (177360910..177392778, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (177975271..178007142, complement)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 1741 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:177763543-177764294 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr1:177883789-177884988 Neighboring gene CRYZL2P-SEC16B readthrough Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:177905975-177906476 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr1:177928928-177929429 Neighboring gene SEC16 homolog B, endoplasmic reticulum export factor Neighboring gene MPRA-validated peak475 silencer Neighboring gene ReSE screen-validated silencer GRCh37_chr1:178019054-178019211 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 2141 Neighboring gene uncharacterized LOC124904459 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:178062715-178063216 Neighboring gene RASAL2 antisense RNA 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. p53-inducible long non-coding RNA PICART1 mediates cancer cell proliferation and migration. Cao Y, et al. Int J Oncol, 2017 May. PMID 28339031
    2. Identification and analysis of unitary pseudogenes: historic and contemporary gene losses in humans and other primates. Zhang ZD, et al. Genome Biol, 2010. PMID 20210993, Free PMC Article
    3. Prediction of the coding sequences of unidentified human genes. XXI. The complete sequences of 60 new cDNA clones from brain which code for large proteins. Nagase T, et al. DNA Res, 2001 Aug 31. PMID 11572484
    4. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article
    5. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Markers

    Readthrough CRYZL2P-SEC16B

    Readthrough gene: CRYZL2P-SEC16B, Included gene: SEC16B

    Other Names

    • quinone oxidoreductase-like protein 2 pseudogene

    Clone Names

    • FLJ00305, FLJ35512, FLJ58538, KIAA1928, DKFZp686C2486

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_037167.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL359075, BX538051
      Related
      ENST00000476232.6

    2. NR_151483.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL359075

    3. NR_151484.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL359075

    4. NR_151485.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL359075

    5. NR_151486.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL359075

    6. NR_151487.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL359075

    7. NR_151488.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL359075

    8. NR_151489.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL359075

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

      Range
      178006136..178038007 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060925.1 Alternate T2T-CHM13v2.0

      Range
      177360910..177392778 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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