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    GPN3 GPN-loop GTPase 3 [ Bos taurus (cattle) ]

    Gene ID: 506597, updated on 4-Apr-2024

    Summary

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    Official Symbol
    GPN3provided by VGNC
    Official Full Name
    GPN-loop GTPase 3provided by VGNC
    Primary source
    VGNC:VGNC:29540
    See related
    BGD:BT16347; Ensembl:ENSBTAG00000005347
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Also known as
    ATPBD1C
    Orthologs
    human mouse all
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    Genomic context

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    See GPN3 in Genome Data Viewer
    Location:
    chromosome: 17
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 17 NC_037344.1 (54336988..54359821, complement)

    Chromosome 17 - NC_037344.1Genomic Context describing neighboring genes Neighboring gene ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 2 Neighboring gene anaphase promoting complex subunit 7 Neighboring gene microRNA mir-2285an Neighboring gene actin related protein 2/3 complex subunit 3 Neighboring gene family with sequence similarity 216 member A Neighboring gene VPS29 retromer complex component

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037344.1 Chromosome 17 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC142332

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    GPN-loop GTPase 3
    Names
    ATP binding domain 1 family, member C

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001075272.2 → NP_001068740.1  GPN-loop GTPase 3

      See identical proteins and their annotated locations for NP_001068740.1

      Status: PROVISIONAL

      Source sequence(s)
      BC120171
      UniProtKB/Swiss-Prot
      Q0P5E2
      Related
      ENSBTAP00000007032.5, ENSBTAT00000007032.6
      Conserved Domains (2) summary
      COG1100
      Location:1 → 206
      Gem1; GTPase SAR1 family domain [General function prediction only]
      pfam03029
      Location:8 → 254
      ATP_bind_1; Conserved hypothetical ATP binding protein

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037344.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      54336988..54359821 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005217762.5 → XP_005217819.1  GPN-loop GTPase 3 isoform X1

      Related
      ENSBTAP00000100985.1, ENSBTAT00000097505.1
      Conserved Domains (2) summary
      COG1100
      Location:1 → 206
      Gem1; GTPase SAR1 family domain [General function prediction only]
      pfam03029
      Location:8 → 254
      ATP_bind_1; Conserved hypothetical ATP binding protein

    2. XM_005217763.5 → XP_005217820.1  GPN-loop GTPase 3 isoform X2

      Related
      ENSBTAP00000084992.1, ENSBTAT00000105238.1
      Conserved Domains (2) summary
      COG1100
      Location:9 → 184
      Gem1; GTPase SAR1 family domain [General function prediction only]
      pfam03029
      Location:1 → 232
      ATP_bind_1; Conserved hypothetical ATP binding protein

    RNA

    1. XR_009490947.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q0P5E2.1 GenPept UniProtKB/Swiss-Prot:Q0P5E2

    Gene LinkOut

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