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    1700012B07Rik RIKEN cDNA 1700012B07 gene [ Mus musculus (house mouse) ]

    Gene ID: 69324, updated on 8-Feb-2024

    Summary

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    Official Symbol
    1700012B07Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 1700012B07 geneprovided by MGI
    Primary source
    MGI:MGI:1916574
    See related
    Ensembl:ENSMUSG00000020617 AllianceGenome:MGI:1916574
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    1700069D21Rik
    Expression
    Restricted expression toward testis adult (RPKM 57.0) See more
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    Genomic context

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    See 1700012B07Rik in Genome Data Viewer
    Location:
    11 E1; 11 72.61 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (109679093..109718905, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (109788266..109828079, complement)

    Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105243553 Neighboring gene FAM20A, golgi associated secretory pathway pseudokinase Neighboring gene STARR-seq mESC enhancer starr_31027 Neighboring gene STARR-seq mESC enhancer starr_31028 Neighboring gene STARR-seq mESC enhancer starr_31029 Neighboring gene predicted gene, 42093 Neighboring gene predicted gene 11683 Neighboring gene RIKEN cDNA 1700023C21 gene Neighboring gene CapStarr-seq enhancer MGSCv37_chr11:109721516-109721718 Neighboring gene STARR-positive B cell enhancer ABC_E3034 Neighboring gene STARR-seq mESC enhancer starr_31030 Neighboring gene STARR-seq mESC enhancer starr_31031 Neighboring gene STARR-seq mESC enhancer starr_31032 Neighboring gene predicted gene, 39444

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
    2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC69324

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001162428.1 → NP_001155900.1  uncharacterized protein LOC69324 isoform 1

      See identical proteins and their annotated locations for NP_001155900.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
      Source sequence(s)
      AK132924
      Consensus CDS
      CCDS48973.1
      UniProtKB/TrEMBL
      Q2TBY1, Q3V0S8
      Related
      ENSMUSP00000102285.2, ENSMUST00000106674.8

    2. NM_027038.1 → NP_081314.1  uncharacterized protein LOC69324 isoform 2

      See identical proteins and their annotated locations for NP_081314.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) uses an alternate splice junction for its 3' terminus, compared to variant 1, that results in a shorter protein (isoform 2) with a distinct C-terminus, compared to isoform 1.
      Source sequence(s)
      AK005888, AK132924
      Consensus CDS
      CCDS48972.1
      UniProtKB/TrEMBL
      Q4KKZ5, Q9DAE9
      Related
      ENSMUSP00000020941.5, ENSMUST00000020941.11

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000077.7 Reference GRCm39 C57BL/6J

      Range
      109679093..109718905 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006534114.4 → XP_006534177.1  uncharacterized protein LOC69324 isoform X1

    Nucleotide Protein Strain
    Heading Accession and Version

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