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    Dcst1 DC-STAMP domain containing 1 [ Mus musculus (house mouse) ]

    Gene ID: 77772, updated on 8-May-2024

    Summary

    Official Symbol
    Dcst1provided by MGI
    Official Full Name
    DC-STAMP domain containing 1provided by MGI
    Primary source
    MGI:MGI:1925022
    See related
    Ensembl:ENSMUSG00000042672 AllianceGenome:MGI:1925022
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    A330106H01Rik
    Summary
    This gene encodes a transmembrane protein. A similar gene in human has been associated with dendritic cells. [provided by RefSeq, May 2015]
    Expression
    Biased expression in testis adult (RPKM 31.4), duodenum adult (RPKM 3.4) and 1 other tissue See more
    Orthologs
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    Genomic context

    See Dcst1 in Genome Data Viewer
    Location:
    3 F1; 3 39.08 cM
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (89257526..89272560, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (89350219..89365253, complement)

    Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_08230 Neighboring gene predicted gene, 34118 Neighboring gene ephrin A4 Neighboring gene ADAM metallopeptidase domain 15 Neighboring gene STARR-positive B cell enhancer ABC_E4553 Neighboring gene DC-STAMP domain containing 2 Neighboring gene STARR-seq mESC enhancer starr_08235 Neighboring gene zinc finger and BTB domain containing 7B Neighboring gene STARR-seq mESC enhancer starr_08237 Neighboring gene STARR-positive B cell enhancer ABC_E3446 Neighboring gene predicted gene 15417 Neighboring gene lens epithelial protein

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (2)  1 citation
    • Targeted (1) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General protein information

    Preferred Names
    E3 ubiquitin-protein ligase DCST1
    Names
    DC-STAMP domain-containing protein 1
    RING-type E3 ubiquitin transferase
    NP_084250.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_029974.2NP_084250.1  E3 ubiquitin-protein ligase DCST1

      See identical proteins and their annotated locations for NP_084250.1

      Status: REVIEWED

      Source sequence(s)
      AK030269
      Consensus CDS
      CCDS38490.1
      UniProtKB/Swiss-Prot
      Q059Y8
      Related
      ENSMUSP00000065502.7, ENSMUST00000070820.7
      Conserved Domains (1) summary
      pfam07782
      Location:431621
      DC_STAMP; DC-STAMP-like protein

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000069.7 Reference GRCm39 C57BL/6J

      Range
      89257526..89272560 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)