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    Bivm basic, immunoglobulin-like variable motif containing [ Mus musculus (house mouse) ]

    Gene ID: 246229, updated on 12-May-2024

    Summary

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    Official Symbol
    Bivmprovided by MGI
    Official Full Name
    basic, immunoglobulin-like variable motif containingprovided by MGI
    Primary source
    MGI:MGI:2179809
    See related
    Ensembl:ENSMUSG00000041684 AllianceGenome:MGI:2179809
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Predicted to be located in cytoplasm and nucleus. Orthologous to human BIVM (basic, immunoglobulin-like variable motif containing). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Ubiquitous expression in CNS E18 (RPKM 4.7), CNS E14 (RPKM 4.5) and 28 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See Bivm in Genome Data Viewer
    Location:
    1 C1.1; 1 23.54 cM
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (44158032..44183931)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (44118957..44144771)

    Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene coiled-coil domain containing 168 Neighboring gene testis expressed 30 Neighboring gene protein O-glucosyltransferase 2 Neighboring gene CapStarr-seq enhancer MGSCv37_chr1:44176158-44176267 Neighboring gene STARR-positive B cell enhancer mm9_chr1:44204561-44204862 Neighboring gene excision repair cross-complementing rodent repair deficiency, complementation group 5 Neighboring gene methyltransferase like 21E Neighboring gene predicted gene 15833

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. BIVM, a novel gene widely distributed among deuterostomes, shares a core sequence with an unusual gene in Giardia lamblia. Yoder JA, et al. Genomics, 2002 Jun. PMID 12036287
    2. Libraries enriched for alternatively spliced exons reveal splicing patterns in melanocytes and melanomas. Watahiki A, et al. Nat Methods, 2004 Dec. PMID 15782199
    3. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
    4. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
    5. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073

    See all (13) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 
    • Targeted (2) 

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    basic immunoglobulin-like variable motif-containing protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001357046.1 → NP_001343975.1  basic immunoglobulin-like variable motif-containing protein

      Status: VALIDATED

      Source sequence(s)
      AC123800, BC082584, BY210554
      Consensus CDS
      CCDS14930.1
      UniProtKB/Swiss-Prot
      Q8CBX9, Q8CCP3

    2. NM_001357047.1 → NP_001343976.1  basic immunoglobulin-like variable motif-containing protein

      Status: VALIDATED

      Source sequence(s)
      AC123800
      Consensus CDS
      CCDS14930.1
      UniProtKB/Swiss-Prot
      Q8CBX9, Q8CCP3
      Related
      ENSMUSP00000041964.2, ENSMUST00000035991.8

    3. NM_001357048.1 → NP_001343977.1  basic immunoglobulin-like variable motif-containing protein

      Status: VALIDATED

      Source sequence(s)
      AC123800
      Consensus CDS
      CCDS14930.1
      UniProtKB/Swiss-Prot
      Q8CBX9, Q8CCP3

    4. NM_144558.4 → NP_653141.3  basic immunoglobulin-like variable motif-containing protein

      See identical proteins and their annotated locations for NP_653141.3

      Status: VALIDATED

      Source sequence(s)
      AK032375, AK034329, AK047404, CJ309003
      Consensus CDS
      CCDS14930.1
      UniProtKB/Swiss-Prot
      Q8CBX9, Q8CCP3
      Related
      ENSMUSP00000110357.3, ENSMUST00000114709.3

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000067.7 Reference GRCm39 C57BL/6J

      Range
      44158032..44183931
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006495998.4 → XP_006496061.3  basic immunoglobulin-like variable motif-containing protein isoform X1

    2. XM_030254282.2 → XP_030110142.2  basic immunoglobulin-like variable motif-containing protein isoform X2

    3. XM_036165120.1 → XP_036021013.1  basic immunoglobulin-like variable motif-containing protein isoform X3

      UniProtKB/Swiss-Prot
      Q8CBX9, Q8CCP3

    4. XM_030254299.2 → XP_030110159.1  basic immunoglobulin-like variable motif-containing protein isoform X3

      UniProtKB/Swiss-Prot
      Q8CBX9, Q8CCP3

    5. XM_036165121.1 → XP_036021014.1  basic immunoglobulin-like variable motif-containing protein isoform X4

    6. XM_030254293.1 → XP_030110153.1  basic immunoglobulin-like variable motif-containing protein isoform X3

      UniProtKB/Swiss-Prot
      Q8CBX9, Q8CCP3

    7. XM_006496004.4 → XP_006496067.1  basic immunoglobulin-like variable motif-containing protein isoform X3

      See identical proteins and their annotated locations for XP_006496067.1

      UniProtKB/Swiss-Prot
      Q8CBX9, Q8CCP3

    8. XM_036165119.1 → XP_036021012.1  basic immunoglobulin-like variable motif-containing protein isoform X3

      UniProtKB/Swiss-Prot
      Q8CBX9, Q8CCP3

    9. XM_017320721.3 → XP_017176210.1  basic immunoglobulin-like variable motif-containing protein isoform X3

      UniProtKB/Swiss-Prot
      Q8CBX9, Q8CCP3
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8CBX9.1 GenPept UniProtKB/Swiss-Prot:Q8CBX9

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