Cstad CSA-conditional, T cell activation-dependent protein [Mus musculus (house mouse)] - Gene

Summary

Official Symbol: Cstadprovided by MGI
Official Full Name: CSA-conditional, T cell activation-dependent proteinprovided by MGI
Primary source: MGI:MGI:1925867
See related: Ensembl:ENSMUSG00000047363 AllianceGenome:MGI:1925867
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Mus musculus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as: 9530039B02Rik
Summary: Acts upstream of or within mitochondrial membrane organization. Located in mitochondrial outer membrane. Is expressed in cranium. [provided by Alliance of Genome Resources, Apr 2022]
Expression: Broad expression in bladder adult (RPKM 1.5), cortex adult (RPKM 1.0) and 17 other tissues See more
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Genomic context

Location:: 2 B; 2 21.71 cM

Exon count:: 2

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCm39 (GCF_000001635.27)	2	NC_000068.8 (30485056..30498957)
108.20200622	previous assembly	GRCm38.p6 (GCF_000001635.26)	2	NC_000068.7 (30595044..30608945)

Chromosome 2 - NC_000068.8 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Mouse ENCODE transcriptome data
Description: RNA profiling data sets generated by the Mouse ENCODE project.
BioProject: PRJNA66167
Publication: PMID 25409824
Analysis date: n/a

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

CSA-conditional, T cell activation-dependent (CSTAD) gene has two isoforms and is a mitochondrial protein up-regulated by cyclosporin A in activated T cells
Title: Characterization of a gene encoding two isoforms of a mitochondrial protein up-regulated by cyclosporin A in activated T cells.

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Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics (MGI)

Endonuclease-mediated (1)

General gene information

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Markers

D2Mit33 (e-PCR), detects polymorphism
- UniSTS:129223

D2Dcr46 (e-PCR), detects polymorphism
- UniSTS:507605

NoName (e-PCR)
- UniSTS:491513

Gene Ontology Provided by MGI

Function	Evidence Code	Pubs
enables molecular_function	ND No biological Data available more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within mitochondrial membrane organization	IDA Inferred from Direct Assay more info	PubMed

Component	Evidence Code	Pubs
located_in mitochondrial outer membrane	IDA Inferred from Direct Assay more info	PubMed
located_in mitochondrion	HDA more info	PubMed

General protein information

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Preferred Names: CSA-conditional, T cell activation-dependent protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.