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    si:dkey-154p10.3 si:dkey-154p10.3 [ Danio rerio (zebrafish) ]

    Gene ID: 563659, updated on 27-Mar-2024

    Summary

    Official Symbol
    si:dkey-154p10.3provided by ZNC
    Official Full Name
    si:dkey-154p10.3provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-070912-380
    See related
    Ensembl:ENSDARG00000068366 AllianceGenome:ZFIN:ZDB-GENE-070912-380
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fc19g04; wu:fc19g04
    Summary
    Predicted to enable metal ion binding activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
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    Genomic context

    See si:dkey-154p10.3 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 2 NC_007113.7 (32826215..32834446)
    105 previous assembly GRCz10 (GCF_000002035.5) 2 NC_007113.6 (32843028..32851228)

    Chromosome 2 - NC_007113.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110438072 Neighboring gene pre-mRNA processing factor 4Ba Neighboring gene opsin 4.1 Neighboring gene transmembrane protein 53

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General gene information

    Markers

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    involved_in positive regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007113.7 Reference GRCz11 Primary Assembly

      Range
      32826215..32834446
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_687018.7XP_692110.2  zinc finger protein 354C

      UniProtKB/TrEMBL
      A0A8N7TE03, E9QFV5
      Related
      ENSDARP00000122719.1, ENSDART00000143127.3
      Conserved Domains (3) summary
      COG5048
      Location:500632
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:504524
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:572594
      zf-H2C2_2; Zinc-finger double domain