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    4930453N24Rik RIKEN cDNA 4930453N24 gene [ Mus musculus (house mouse) ]

    Gene ID: 67609, updated on 5-Mar-2024

    Summary

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    Official Symbol
    4930453N24Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 4930453N24 geneprovided by MGI
    Primary source
    MGI:MGI:1914859
    See related
    Ensembl:ENSMUSG00000059920 AllianceGenome:MGI:1914859
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    din
    Summary
    Predicted to be involved in positive regulation of apoptotic process. Predicted to act upstream of or within apoptotic process. Predicted to be located in nucleus. Orthologous to human C3orf38 (chromosome 3 open reading frame 38). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in testis adult (RPKM 37.9), CNS E11.5 (RPKM 4.8) and 11 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See 4930453N24Rik in Genome Data Viewer
    Location:
    16 C1.3; 16 37.1 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 16 NC_000082.7 (64583267..64592735, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 16 NC_000082.6 (64762205..64772372, complement)

    Chromosome 16 - NC_000082.7Genomic Context describing neighboring genes Neighboring gene Eph receptor A3 Neighboring gene STARR-seq mESC enhancer starr_41140 Neighboring gene predicted gene, 41466 Neighboring gene STARR-seq mESC enhancer starr_41141 Neighboring gene STARR-seq mESC enhancer starr_41142 Neighboring gene STARR-seq mESC enhancer starr_41143 Neighboring gene STARR-seq mESC enhancer starr_41144 Neighboring gene STARR-seq mESC enhancer starr_41145 Neighboring gene casein kinase 2, alpha prime interacting protein Neighboring gene STARR-seq mESC enhancer starr_41146 Neighboring gene STARR-seq mESC enhancer starr_41148 Neighboring gene STARR-positive B cell enhancer mm9_chr16:64851511-64851812 Neighboring gene zinc finger protein 654 Neighboring gene CGG triplet repeat binding protein 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Dense incisors (din): a new mouse mutation on chromosome 16 affecting tooth eruption and body size. Sweet HO, et al. J Hered, 1996 Mar-Apr. PMID 8830097
    2. Discovery and characterization of spontaneous mouse models of craniofacial dysmorphology. Palmer K, et al. Dev Biol, 2016 Jul 15. PMID 26234751, Free PMC Article
    3. Exome sequencing reveals pathogenic mutations in 91 strains of mice with Mendelian disorders. Fairfield H, et al. Genome Res, 2015 Jul. PMID 25917818, Free PMC Article
    4. Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray. Tanaka TS, et al. Proc Natl Acad Sci U S A, 2000 Aug 1. PMID 10922068, Free PMC Article
    5. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article

    See all (16) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within apoptotic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in positive regulation of apoptotic process ISO
    Inferred from Sequence Orthology
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISO
    Inferred from Sequence Orthology
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein C3orf38 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_026273.2 → NP_080549.1  uncharacterized protein C3orf38 homolog

      See identical proteins and their annotated locations for NP_080549.1

      Status: PROVISIONAL

      Source sequence(s)
      AK161311
      Consensus CDS
      CCDS28265.1
      UniProtKB/Swiss-Prot
      A9C482, Q3TTL0, Q8VE03
      Related
      ENSMUSP00000076255.7, ENSMUST00000076991.7
      Conserved Domains (1) summary
      pfam15008
      Location:8 → 272
      DUF4518; Domain of unknown function (DUF4518)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000082.7 Reference GRCm39 C57BL/6J

      Range
      64583267..64592735 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006522489.4 → XP_006522552.1  uncharacterized protein C3orf38 homolog isoform X1

      Conserved Domains (1) summary
      pfam15008
      Location:8 → 273
      DUF4518; Domain of unknown function (DUF4518)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q3TTL0.1 GenPept UniProtKB/Swiss-Prot:Q3TTL0

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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