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    Prrt3 proline-rich transmembrane protein 3 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 502873, updated on 13-Apr-2024

    Summary

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    Official Symbol
    Prrt3provided by RGD
    Official Full Name
    proline-rich transmembrane protein 3provided by RGD
    Primary source
    RGD:1562419
    See related
    Ensembl:ENSRNOG00000009863 AllianceGenome:RGD:1562419
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1562419
    Summary
    Predicted to be integral component of membrane. Orthologous to human PRRT3 (proline rich transmembrane protein 3). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Brain (RPKM 62.2), Muscle (RPKM 20.2) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Prrt3 in Genome Data Viewer
    Location:
    4q42
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 4 NC_086022.1 (148196800..148206086, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 4 NC_051339.1 (146641173..146650487, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (145449574..145458900, complement)

    Chromosome 4 - NC_086022.1Genomic Context describing neighboring genes Neighboring gene interleukin 17 receptor E Neighboring gene interleukin 17 receptor C Neighboring gene cysteine-rich with EGF-like domains 1 Neighboring gene ER membrane protein complex subunit 3 Neighboring gene FA complementation group D2 Neighboring gene FANCD2 opposite strand

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    proline-rich transmembrane protein 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001309463.1 → NP_001296392.1  proline-rich transmembrane protein 3 precursor

      See identical proteins and their annotated locations for NP_001296392.1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000004
      UniProtKB/TrEMBL
      A6IBS6, D3ZWQ0
      Related
      ENSRNOP00000013154.6, ENSRNOT00000013154.8
      Conserved Domains (1) summary
      PHA03247
      Location:64 → 468
      PHA03247; large tegument protein UL36; Provisional

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086022.1 Reference GRCr8

      Range
      148196800..148206086 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006237062.5 → XP_006237124.1  proline-rich transmembrane protein 3 isoform X1

      See identical proteins and their annotated locations for XP_006237124.1

      UniProtKB/TrEMBL
      A6IBS6, D3ZWQ0
      Conserved Domains (1) summary
      PHA03247
      Location:64 → 468
      PHA03247; large tegument protein UL36; Provisional

    2. XM_008763200.4 → XP_008761422.1  proline-rich transmembrane protein 3 isoform X1

      See identical proteins and their annotated locations for XP_008761422.1

      UniProtKB/TrEMBL
      A6IBS6, D3ZWQ0
      Conserved Domains (1) summary
      PHA03247
      Location:64 → 468
      PHA03247; large tegument protein UL36; Provisional

    3. XM_006237064.5 → XP_006237126.1  proline-rich transmembrane protein 3 isoform X1

      See identical proteins and their annotated locations for XP_006237126.1

      UniProtKB/TrEMBL
      A6IBS6, D3ZWQ0
      Conserved Domains (1) summary
      PHA03247
      Location:64 → 468
      PHA03247; large tegument protein UL36; Provisional

    4. XM_017592850.3 → XP_017448339.1  proline-rich transmembrane protein 3 isoform X1

      UniProtKB/TrEMBL
      A6IBS6, D3ZWQ0
      Conserved Domains (1) summary
      PHA03247
      Location:64 → 468
      PHA03247; large tegument protein UL36; Provisional

    5. XM_039108256.2 → XP_038964184.1  proline-rich transmembrane protein 3 isoform X2

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001109350.1: Suppressed sequence

      Description
      NM_001109350.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.
    Nucleotide Protein Strain
    Heading Accession and Version

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