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    Slc26a10 solute carrier family 26, member 10 [ Mus musculus (house mouse) ]

    Gene ID: 216441, updated on 30-Apr-2024

    Summary

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    Official Symbol
    Slc26a10provided by MGI
    Official Full Name
    solute carrier family 26, member 10provided by MGI
    Primary source
    MGI:MGI:2143920
    See related
    Ensembl:ENSMUSG00000040441 AllianceGenome:MGI:2143920
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    D630010I07
    Summary
    Predicted to enable anion transmembrane transporter activity. Predicted to be involved in sulfate transport and transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in basolateral plasma membrane. Predicted to be integral component of plasma membrane. Is expressed in cardiovascular system; heart; and heart ventricle. Orthologous to human SLC26A10 (solute carrier family 26 member 10). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Broad expression in stomach adult (RPKM 26.4), heart adult (RPKM 13.4) and 18 other tissues See more
    Orthologs
    all
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    Genomic context

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    See Slc26a10 in Genome Data Viewer
    Location:
    10 D3; 10 74.5 cM
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (127007262..127016690, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 10 NC_000076.6 (127171393..127180705, complement)

    Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 23664 Neighboring gene STARR-seq mESC enhancer starr_28209 Neighboring gene predicted gene, 51819 Neighboring gene beta-1,4-N-acetyl-galactosaminyl transferase 1 Neighboring gene CapStarr-seq enhancer MGSCv37_chr10:126608171-126608358 Neighboring gene Rho guanine nucleotide exchange factor 25 Neighboring gene RIKEN cDNA F420014N23 gene Neighboring gene deltex 3, E3 ubiquitin ligase

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. GenePaint.org: an atlas of gene expression patterns in the mouse embryo. Visel A, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681479, Free PMC Article
    2. Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Ko MS, et al. Development, 2000 Apr. PMID 10725249
    3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (3) 

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC107595

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables antiporter activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables bicarbonate transmembrane transporter activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables chloride transmembrane transporter activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables oxalate transmembrane transporter activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables sulfate transmembrane transporter activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    solute carrier family 26 member 10

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_177615.4 → NP_808283.3  solute carrier family 26 member 10

      Status: VALIDATED

      Source sequence(s)
      AC144852
      Consensus CDS
      CCDS48714.2
      UniProtKB/Swiss-Prot
      A0A1Y7VKB5, Q5EBI0
      UniProtKB/TrEMBL
      F8WGV3
      Related
      ENSMUSP00000152871.2, ENSMUST00000222911.3
      Conserved Domains (1) summary
      TIGR00815
      Location:83 → 656
      sulP; high affinity sulphate transporter 1

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000076.7 Reference GRCm39 C57BL/6J

      Range
      127007262..127016690 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011243422.4 → XP_011241724.1  solute carrier family 26 member 10 isoform X4

      UniProtKB/TrEMBL
      F8WGV3
      Conserved Domains (1) summary
      TIGR00815
      Location:91 → 619
      sulP; high affinity sulphate transporter 1

    2. XM_006513564.5 → XP_006513627.1  solute carrier family 26 member 10 isoform X1

      UniProtKB/TrEMBL
      F8WGV3
      Conserved Domains (1) summary
      TIGR00815
      Location:91 → 670
      sulP; high affinity sulphate transporter 1

    3. XM_006513565.5 → XP_006513628.1  solute carrier family 26 member 10 isoform X3

      UniProtKB/TrEMBL
      F8WGV3
      Conserved Domains (1) summary
      TIGR00815
      Location:91 → 664
      sulP; high affinity sulphate transporter 1

    4. XM_011243421.4 → XP_011241723.1  solute carrier family 26 member 10 isoform X2

      UniProtKB/TrEMBL
      F8WGV3
      Conserved Domains (1) summary
      TIGR00815
      Location:91 → 670
      sulP; high affinity sulphate transporter 1

    5. XM_006513567.5 → XP_006513630.1  solute carrier family 26 member 10 isoform X6

      Conserved Domains (1) summary
      pfam00916
      Location:121 → 492
      Sulfate_transp; Sulfate permease family

    6. XM_006513566.4 → XP_006513629.1  solute carrier family 26 member 10 isoform X5

      Conserved Domains (1) summary
      pfam00916
      Location:121 → 492
      Sulfate_transp; Sulfate permease family

    RNA

    1. XR_004936168.1 RNA Sequence

    2. XR_004936167.1 RNA Sequence

    3. XR_003948677.2 RNA Sequence

    4. XR_003948679.2 RNA Sequence

    5. XR_380388.5 RNA Sequence

    6. XR_001779511.3 RNA Sequence

    7. XR_003948678.2 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5EBI0.2 GenPept UniProtKB/Swiss-Prot:Q5EBI0

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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