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    Tmem156 transmembrane protein 156 [ Mus musculus (house mouse) ]

    Gene ID: 243025, updated on 5-Mar-2024

    Summary

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    Official Symbol
    Tmem156provided by MGI
    Official Full Name
    transmembrane protein 156provided by MGI
    Primary source
    MGI:MGI:2685292
    See related
    Ensembl:ENSMUSG00000037913 AllianceGenome:MGI:2685292
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm446; Col28a1
    Summary
    Orthologous to human TMEM156 (transmembrane protein 156). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Low expression observed in reference dataset See more
    Orthologs
    human all
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    Genomic context

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    See Tmem156 in Genome Data Viewer
    Location:
    5 C3.1; 5 33.58 cM
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (65215558..65249524, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (65058215..65092181, complement)

    Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene toll-like receptor 6 Neighboring gene family with sequence similarity 114, member A1 Neighboring gene STARR-seq mESC enhancer starr_13253 Neighboring gene microRNA 574 Neighboring gene STARR-seq mESC enhancer starr_13254 Neighboring gene CapStarr-seq enhancer MGSCv37_chr5:65397377-65397486 Neighboring gene predicted gene, 32374 Neighboring gene STARR-seq mESC enhancer starr_13256 Neighboring gene STARR-seq mESC enhancer starr_13258 Neighboring gene STARR-seq mESC enhancer starr_13259 Neighboring gene kelch-like 5 Neighboring gene predicted gene, 54287 Neighboring gene STARR-positive B cell enhancer ABC_E849 Neighboring gene WD repeat domain 19

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
    2. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, et al. Nature, 2002 Dec 5. PMID 12466851

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General gene information

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    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    transmembrane protein 156
    Names
    collagen, type XXVIII, alpha 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001370814.2 → NP_001357743.1  transmembrane protein 156

      Status: VALIDATED

      Source sequence(s)
      AC124428, AC132222
      UniProtKB/TrEMBL
      D3Z447
      Related
      ENSMUSP00000044102.4, ENSMUST00000043352.8
      Conserved Domains (1) summary
      pfam15106
      Location:39 → 264
      TMEM156; TMEM156 protein family

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000071.7 Reference GRCm39 C57BL/6J

      Range
      65215558..65249524 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017321216.1 → XP_017176705.1  transmembrane protein 156 isoform X9

      Conserved Domains (1) summary
      pfam15106
      Location:1 → 194
      TMEM156; TMEM156 protein family

    2. XM_017321214.1 → XP_017176703.1  transmembrane protein 156 isoform X7

      UniProtKB/TrEMBL
      A0A1D5RM02
      Related
      ENSMUSP00000148573.2, ENSMUST00000212194.2
      Conserved Domains (1) summary
      pfam15106
      Location:42 → 241
      TMEM156; TMEM156 protein family

    3. XM_017321213.1 → XP_017176702.1  transmembrane protein 156 isoform X6

      Conserved Domains (1) summary
      pfam15106
      Location:51 → 247
      TMEM156; TMEM156 protein family

    4. XM_017321209.1 → XP_017176698.1  transmembrane protein 156 isoform X1

      Conserved Domains (1) summary
      pfam15106
      Location:51 → 276
      TMEM156; TMEM156 protein family

    5. XM_017321212.1 → XP_017176701.1  transmembrane protein 156 isoform X3

      UniProtKB/TrEMBL
      D3Z447
      Conserved Domains (1) summary
      pfam15106
      Location:39 → 264
      TMEM156; TMEM156 protein family

    6. XM_017321210.1 → XP_017176699.1  transmembrane protein 156 isoform X1

      Conserved Domains (1) summary
      pfam15106
      Location:51 → 276
      TMEM156; TMEM156 protein family

    7. XM_036165125.1 → XP_036021018.1  transmembrane protein 156 isoform X11

      Conserved Domains (1) summary
      pfam15106
      Location:1 → 142
      TMEM156; TMEM156 protein family

    8. XM_030254500.2 → XP_030110360.1  transmembrane protein 156 isoform X5

      UniProtKB/TrEMBL
      D3Z447
      Conserved Domains (1) summary
      pfam15106
      Location:39 → 264
      TMEM156; TMEM156 protein family

    9. XM_017321211.3 → XP_017176700.1  transmembrane protein 156 isoform X2

      UniProtKB/TrEMBL
      A0A1D5RLR8
      Related
      ENSMUSP00000148480.2, ENSMUST00000212080.2
      Conserved Domains (1) summary
      pfam15106
      Location:51 → 276
      TMEM156; TMEM156 protein family

    10. XM_030254501.2 → XP_030110361.1  transmembrane protein 156 isoform X10

      UniProtKB/TrEMBL
      A0A1D5RLB5, A0A1D5RM02
      Related
      ENSMUSP00000148300.2, ENSMUST00000212640.2
      Conserved Domains (1) summary
      pfam15106
      Location:42 → 212
      TMEM156; TMEM156 protein family

    11. XM_036165124.1 → XP_036021017.1  transmembrane protein 156 isoform X4

      UniProtKB/TrEMBL
      A0A1D5RM02
      Conserved Domains (1) summary
      pfam15106
      Location:51 → 276
      TMEM156; TMEM156 protein family

    12. XM_017321215.2 → XP_017176704.1  transmembrane protein 156 isoform X8

      Conserved Domains (1) summary
      pfam15106
      Location:51 → 221
      TMEM156; TMEM156 protein family
    Nucleotide Protein Strain
    Heading Accession and Version

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