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    Y54H5A.2 Protein HGH1 homolog [ Caenorhabditis elegans ]

    Gene ID: 175699, updated on 5-Jun-2022

    Summary

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    Gene symbol
    Y54H5A.2
    Gene description
    Protein HGH1 homolog
    Primary source
    WormBase:WBGene00021900
    Locus tag
    CELE_Y54H5A.2
    See related
    AllianceGenome:WB:WBGene00021900
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Orthologous to human HGH1 (HGH1 homolog). [provided by Alliance of Genome Resources, Apr 2022]
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    Genomic context

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    See Y54H5A.2 in Genome Data Viewer
    Location:
    chromosome: III
    Exon count:
    7
    Sequence:
    Chromosome: III; NC_003281.10 (5137358..5149578, complement)

    Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene MOR2-PAG1_N domain-containing protein;Protein furry C-terminal domain-containing protein Neighboring gene T-box protein 2 Neighboring gene ncRNA Neighboring gene RNA-binding protein 42 Neighboring gene Glutamate-rich WD repeat-containing protein 1

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003281.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Interactome analysis of Caenorhabditis elegans synapses by TurboID-based proximity labeling. Artan M, et al. J Biol Chem, 2021 Sep. PMID 34416233, Free PMC Article
    2. Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network. Simonis N, et al. Nat Methods, 2009 Jan. PMID 19123269, Free PMC Article
    3. Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules. Cipriani PG, et al. Elife, 2021 Jul 5. PMID 34223818, Free PMC Article
    4. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
    5. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    Protein HGH1 homolog
    NP_498089.2
    • Partially confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003281.10 Reference assembly

      Range
      5137358..5149578 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_065688.7 → NP_498089.2  Protein HGH1 homolog [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_498089.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q9BL64
      Conserved Domains (2) summary
      pfam04063
      Location:101 → 282
      DUF383; Domain of unknown function (DUF383)
      pfam04064
      Location:287 → 351
      DUF384; Domain of unknown function (DUF384)
    Nucleotide Protein
    Heading Accession and Version

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