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    Msantd4 Myb/SANT-like DNA-binding domain containing 4 with coiled-coils [ Mus musculus (house mouse) ]

    Gene ID: 78100, updated on 5-Mar-2024

    Summary

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    Official Symbol
    Msantd4provided by MGI
    Official Full Name
    Myb/SANT-like DNA-binding domain containing 4 with coiled-coilsprovided by MGI
    Primary source
    MGI:MGI:1925350
    See related
    Ensembl:ENSMUSG00000041124 AllianceGenome:MGI:1925350
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Mysantd4; 8430410K20Rik
    Summary
    Predicted to be located in nucleus. Orthologous to human MSANTD4 (Myb/SANT DNA binding domain containing 4 with coiled-coils). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Broad expression in CNS E11.5 (RPKM 18.0), bladder adult (RPKM 11.7) and 21 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See Msantd4 in Genome Data Viewer
    Location:
    9 A1; 9 2.46 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (4376552..4386890)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (4376552..4386890)

    Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene CapStarr-seq enhancer MGSCv37_chr9:4309539-4309751 Neighboring gene aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase Neighboring gene STARR-seq mESC enhancer starr_23158 Neighboring gene kelch repeat and BTB (POZ) domain containing 3 Neighboring gene STARR-positive B cell enhancer ABC_E2280 Neighboring gene predicted gene, 53495 Neighboring gene glutamate receptor, ionotropic, AMPA4 (alpha 4) Neighboring gene STARR-seq mESC enhancer starr_23160 Neighboring gene predicted gene, 46101 Neighboring gene STARR-seq mESC enhancer starr_23161 Neighboring gene predicted gene, 46100

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Assembly, verification, and initial annotation of the NIA mouse 7.4K cDNA clone set. VanBuren V, et al. Genome Res, 2002 Dec. PMID 12466305, Free PMC Article
    2. Identification of 14-3-3epsilon substrates from embryonic murine brain. Ballif BA, et al. J Proteome Res, 2006 Sep. PMID 16944949
    3. Lysosomal Signaling Licenses Embryonic Stem Cell Differentiation via Inactivation of Tfe3. Villegas F, et al. Cell Stem Cell, 2019 Feb 7. PMID 30595499
    4. Database resources of the National Center for Biotechnology Information. Wheeler DL, et al. Nucleic Acids Res, 2001 Jan 1. PMID 11125038, Free PMC Article
    5. Libraries enriched for alternatively spliced exons reveal splicing patterns in melanocytes and melanomas. Watahiki A, et al. Nat Methods, 2004 Dec. PMID 15782199

    See all (16) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (2) 

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISO
    Inferred from Sequence Orthology
    more info
    		  

    General protein information

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    Preferred Names
    myb/SANT-like DNA-binding domain-containing protein 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_145609.2 → NP_663584.1  myb/SANT-like DNA-binding domain-containing protein 4

      See identical proteins and their annotated locations for NP_663584.1

      Status: VALIDATED

      Source sequence(s)
      AI851587, AK032884, BQ552041, CT030685
      Consensus CDS
      CCDS22796.1
      UniProtKB/Swiss-Prot
      Q91YU3
      Related
      ENSMUSP00000148805.2, ENSMUST00000212075.2
      Conserved Domains (2) summary
      pfam13873
      Location:8 → 86
      Myb_DNA-bind_5; Myb/SANT-like DNA-binding domain
      cl25732
      Location:207 → 342
      SMC_N; RecF/RecN/SMC N terminal domain

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000075.7 Reference GRCm39 C57BL/6J

      Range
      4376552..4386890
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q91YU3.1 GenPept UniProtKB/Swiss-Prot:Q91YU3

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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