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    1700003G18Rik RIKEN cDNA 1700003G18 gene [ Mus musculus (house mouse) ]

    Gene ID: 69350, updated on 8-Feb-2024

    Summary

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    Official Symbol
    1700003G18Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 1700003G18 geneprovided by MGI
    Primary source
    MGI:MGI:1916600
    See related
    Ensembl:ENSMUSG00000087621 AllianceGenome:MGI:1916600
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    2610312K03Rik
    Expression
    Biased expression in testis adult (RPKM 3.6) and genital fat pad adult (RPKM 0.2) See more
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    Genomic context

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    See 1700003G18Rik in Genome Data Viewer
    Location:
    7 F1; 7 61.42 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (115680997..115692384, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (116081762..116093149, complement)

    Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_19945 Neighboring gene predicted gene, 51455 Neighboring gene SRY (sex determining region Y)-box 6 Neighboring gene STARR-positive B cell enhancer mm9_chr7:122759944-122760244 Neighboring gene STARR-seq mESC enhancer starr_19946 Neighboring gene STARR-seq mESC enhancer starr_19947 Neighboring gene STARR-seq mESC enhancer starr_19949 Neighboring gene STARR-seq mESC enhancer starr_19950 Neighboring gene STARR-seq mESC enhancer starr_19951 Neighboring gene STARR-seq mESC enhancer starr_19952 Neighboring gene RIKEN cDNA 1110004F10 gene Neighboring gene STARR-seq mESC enhancer starr_19954 Neighboring gene STARR-positive B cell enhancer mm9_chr7:123236585-123236886 Neighboring gene STARR-positive B cell enhancer mm9_chr7:123237410-123237710 Neighboring gene SRY (sex determining region Y)-box 6, opposite strand Neighboring gene nucleoporin 35 pseudogene Neighboring gene pleckstrin homology domain containing, family A member 7 Neighboring gene STARR-seq mESC enhancer starr_19973 Neighboring gene STARR-seq mESC enhancer starr_19974 Neighboring gene STARR-positive B cell enhancer ABC_E4967 Neighboring gene predicted gene 44867 Neighboring gene small nucleolar RNA, C/D box 14A Neighboring gene ribosomal protein S13

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Global discovery of erythroid long noncoding RNAs reveals novel regulators of red cell maturation. Alvarez-Dominguez JR, et al. Blood, 2014 Jan 23. PMID 24200680, Free PMC Article
    2. Widespread and dynamic translational control of red blood cell development. Alvarez-Dominguez JR, et al. Blood, 2017 Feb 2. PMID 27899360, Free PMC Article
    3. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
    4. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
    5. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_029433.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC160535
      Related
      ENSMUST00000140689.8

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000073.7 Reference GRCm39 C57BL/6J

      Range
      115680997..115692384 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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