rbm4.3 RNA binding motif protein 4.3 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: rbm4.3provided by ZNC
Official Full Name: RNA binding motif protein 4.3provided by ZNC
Primary source: ZFIN:ZDB-GENE-040426-1938
See related: Ensembl:ENSDARG00000022129 AllianceGenome:ZFIN:ZDB-GENE-040426-1938
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: fb55c03; fb78a04; fj36h04; zgc:56141; zgc:77000; wu:fb55c03; wu:fb78a04; wu:fj36h04
Summary: Predicted to enable mRNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be active in nuclear speck. Orthologous to human RBM4 (RNA binding motif protein 4). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: all
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Genomic context

Location:: chromosome: 7

Exon count:: 4

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	7	NC_007118.7 (22792090..22795637)
105	previous assembly	GRCz10 (GCF_000002035.5)	7	NC_007118.6 (22520933..22524480)

Chromosome 7 - NC_007118.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

fj87d05.y1 (e-PCR)
- UniSTS:200192

fb55c03.x1 (e-PCR)
- UniSTS:203325

fj36h04.x1 (e-PCR)
- UniSTS:188487

fb78a04.x1 (e-PCR)
- UniSTS:187550

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables RNA binding	IBA Inferred from Biological aspect of Ancestor more info
enables RNA binding	IEA Inferred from Electronic Annotation more info
enables nucleic acid binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in mRNA splicing, via spliceosome	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
is_active_in nuclear speck	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: RNA-binding protein 4.3; uncharacterized protein LOC406277

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_213317.3 → NP_998482.1 RNA-binding protein 4.3

See identical proteins and their annotated locations for NP_998482.1

Status: VALIDATED

Source sequence(s)

AL928799

UniProtKB/TrEMBL

A0A8M1PJ67, Q6NXC1

Related

ENSDARP00000117497.1, ENSDART00000135207.3

Conserved Domains (1) summary

cl17169
Location:2 → 68

RRM_SF; RNA recognition motif (RRM) superfamily

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

NC_007118.7 Reference GRCz11 Primary Assembly

Range

22792090..22795637

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_005172266.4 → XP_005172323.1 uncharacterized protein LOC406277 isoform X1

UniProtKB/TrEMBL

A0A8M2BJM8

Conserved Domains (1) summary

cl17169
Location:23 → 89

RRM_SF; RNA recognition motif (RRM) superfamily

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

NM_213004.1: Suppressed sequence

Description

NM_213004.1: This RefSeq was permanently suppressed because there is insufficient support for the transcript and the protein.