btr12 bloodthirsty-related gene family, member 12 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: btr12provided by ZNC
Official Full Name: bloodthirsty-related gene family, member 12provided by ZNC
Primary source: ZFIN:ZDB-GENE-060929-548
See related: Ensembl:ENSDARG00000051809 AllianceGenome:ZFIN:ZDB-GENE-060929-548
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: zgc:153732
Summary: Predicted to enable zinc ion binding activity. Orthologous to human TRIM60 (tripartite motif containing 60). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: all
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Genomic context

Location:: chromosome: 7

Exon count:: 9

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	7	NC_007118.7 (73668061..73685576)
105	previous assembly	GRCz10 (GCF_000002035.5)	7	NC_007118.6 (73446295..73463463)

Chromosome 7 - NC_007118.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables metal ion binding	IEA Inferred from Electronic Annotation more info
enables zinc ion binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within immune system process	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in cytoplasm	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: bloodthirsty-related gene family, member 12

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001076619.1 → NP_001070087.1 bloodthirsty-related gene family, member 12

See identical proteins and their annotated locations for NP_001070087.1

Status: PROVISIONAL

Source sequence(s)

BC124441

UniProtKB/TrEMBL

A0A8M1NB38, F1QHG5, Q08C26

Related

ENSDARP00000050356.7, ENSDART00000050357.8

Conserved Domains (4) summary

cd00162
Location:18 → 61

RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...

pfam00643
Location:166 → 204

zf-B_box; B-box zinc finger

cd13733
Location:383 → 557

SPRY_PRY_C-I_1; PRY/SPRY domain in tripartite motif-containing (TRIM) proteins, including TRIM5, TRIM6, TRIM7, TRIM10, TRIM11, TRIM17, TRIM20, TRIM21, TRIM27, TRIM35, TRIM38, TRIM41, TRIM50, TRIM58, TRIM60, TRIM62, TRIM69, TRIM72, NF7 and bloodthirsty

cl21478
Location:203 → 306

ATP-synt_B; ATP synthase B/B' CF(0)