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    igsf5a immunoglobulin superfamily, member 5a [ Danio rerio (zebrafish) ]

    Gene ID: 561211, updated on 27-Mar-2024

    Summary

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    Official Symbol
    igsf5aprovided by ZNC
    Official Full Name
    immunoglobulin superfamily, member 5aprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-091204-182
    See related
    Ensembl:ENSDARG00000087983 AllianceGenome:ZFIN:ZDB-GENE-091204-182
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    igsf5; si:ch211-231m12.2
    Summary
    Predicted to act upstream of or within cell-cell adhesion. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human IGSF5 (immunoglobulin superfamily member 5). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    all
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    Genomic context

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    See igsf5a in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 10 NC_007121.7 (39030371..39056054, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 10 NC_007121.6 (39087294..39112430, complement)

    Chromosome 10 - NC_007121.7Genomic Context describing neighboring genes Neighboring gene Down syndrome cell adhesion molecule a Neighboring gene Purkinje cell protein 4a Neighboring gene high mobility group nucleosome binding domain 1b Neighboring gene mitochondrial intermediate peptidase b

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Direct activation of the Mauthner cell by electric field pulses drives ultrarapid escape responses. Tabor KM, et al. J Neurophysiol, 2014 Aug 15. PMID 24848468, Free PMC Article
    2. The SARS-CoV-2 receptor and other key components of the Renin-Angiotensin-Aldosterone System related to COVID-19 are expressed in enterocytes in larval zebrafish. Postlethwait JH, et al. Biol Open, 2021 Mar 23. PMID 33757938, Free PMC Article
    3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    immunoglobulin superfamily member 5-like
    Names
    immunoglobulin superfamily, member 5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007121.7 Reference GRCz11 Primary Assembly

      Range
      39030371..39056054 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021479449.1 → XP_021335124.1  immunoglobulin superfamily member 5-like isoform X1

      Conserved Domains (2) summary
      cl11960
      Location:138 → 201
      Ig; Immunoglobulin domain
      cl28434
      Location:21 → 115
      I-set; Immunoglobulin I-set domain

    2. XM_684617.9 → XP_689709.3  immunoglobulin superfamily member 5-like isoform X2

      Related
      ENSDARP00000117822.1, ENSDART00000144036.2
      Conserved Domains (2) summary
      pfam07679
      Location:21 → 115
      I-set; Immunoglobulin I-set domain
      cl11960
      Location:138 → 201
      Ig; Immunoglobulin domain
    Nucleotide Protein Strain
    Heading Accession and Version

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