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    Wdr64 WD repeat domain 64 [ Mus musculus (house mouse) ]

    Gene ID: 75820, updated on 30-Apr-2024

    Summary

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    Official Symbol
    Wdr64provided by MGI
    Official Full Name
    WD repeat domain 64provided by MGI
    Primary source
    MGI:MGI:1923070
    See related
    Ensembl:ENSMUSG00000026523 AllianceGenome:MGI:1923070
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    4930415O10Rik; 4930511H01Rik
    Summary
    Orthologous to human WDR64 (WD repeat domain 64). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Restricted expression toward testis adult (RPKM 24.1) See more
    Orthologs
    human all
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    Genomic context

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    See Wdr64 in Genome Data Viewer
    Location:
    1 H3- H4; 1 81.71 cM
    Exon count:
    28
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (175526135..175643300)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (175698569..175815734)

    Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene opsin 3 Neighboring gene STARR-positive B cell enhancer ABC_E409 Neighboring gene choroideremia-like Neighboring gene predicted gene, 39707 Neighboring gene predicted gene, 25560 Neighboring gene STARR-positive B cell enhancer ABC_E5861 Neighboring gene predicted gene, 36360 Neighboring gene exonuclease 1 Neighboring gene predicted gene, 23805

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
    5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (2) 

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    WD repeat-containing protein 64

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_029453.2 → NP_083729.2  WD repeat-containing protein 64

      Status: VALIDATED

      Source sequence(s)
      AC122854, AC124366
      Consensus CDS
      CCDS48460.1
      UniProtKB/TrEMBL
      A0A0A6YWX3, E9QM22
      Related
      ENSMUSP00000091846.5, ENSMUST00000094288.10
      Conserved Domains (3) summary
      COG2319
      Location:246 → 684
      WD40; WD40 repeat [General function prediction only]
      sd00039
      Location:339 → 374
      7WD40; WD40 repeat [structural motif]
      cl02567
      Location:284 → 538
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000067.7 Reference GRCm39 C57BL/6J

      Range
      175526135..175643300
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006497022.4 → XP_006497085.1  WD repeat-containing protein 64 isoform X1

      Conserved Domains (3) summary
      COG2319
      Location:449 → 854
      WD40; WD40 repeat [General function prediction only]
      sd00039
      Location:339 → 374
      7WD40; WD40 repeat [structural motif]
      cl29593
      Location:284 → 538
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

    RNA

    1. XR_373620.3 RNA Sequence

    2. XR_003947245.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9D565.2 GenPept UniProtKB/Swiss-Prot:Q9D565

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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