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    • Showing Current items.

    si:ch73-380l3.2 si:ch73-380l3.2 [ Danio rerio (zebrafish) ]

    Gene ID: 100003913, updated on 27-Mar-2024

    Summary

    Official Symbol
    si:ch73-380l3.2provided by ZNC
    Official Full Name
    si:ch73-380l3.2provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-080303-1
    See related
    Ensembl:ENSDARG00000075697 AllianceGenome:ZFIN:ZDB-GENE-080303-1
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    sc:d136
    Summary
    Predicted to enable sialic acid binding activity. Predicted to be involved in cell adhesion. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    NEW
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    Genomic context

    See si:ch73-380l3.2 in Genome Data Viewer
    Location:
    chromosome: 15
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 15 NC_007126.7 (38014893..38021948)
    105 previous assembly GRCz10 (GCF_000002035.5) 15 NC_007126.6 (38113130..38120263)

    Chromosome 15 - NC_007126.7Genomic Context describing neighboring genes Neighboring gene myeloid cell surface antigen CD33-like Neighboring gene uncharacterized LOC108179343 Neighboring gene si:ch73-380l3.3 Neighboring gene si:ch73-380l3.4

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General gene information

    Markers

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables sialic acid binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Process Evidence Code Pubs
    involved_in cell adhesion IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Component Evidence Code Pubs
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    General protein information

    Preferred Names
    uncharacterized protein LOC100003913

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001361237.1NP_001348166.1  uncharacterized protein LOC100003913 precursor

      Status: VALIDATED

      Source sequence(s)
      CR944667, CU466279, EH550738, EH571870
      UniProtKB/TrEMBL
      A0A8M9NYR4
      Conserved Domains (1) summary
      cl11960
      Location:24141
      Ig; Immunoglobulin domain

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007126.7 Reference GRCz11 Primary Assembly

      Range
      38014893..38021948
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021466477.1XP_021322152.1  uncharacterized protein LOC100003913

      UniProtKB/TrEMBL
      A0A8M9NYR4
      Related
      ENSDARP00000098732.2, ENSDART00000114188.5
      Conserved Domains (1) summary
      cl11960
      Location:24141
      Ig; Immunoglobulin domain

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001098263.1: Suppressed sequence

      Description
      NM_001098263.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.