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    Ism1 isthmin 1, angiogenesis inhibitor [ Mus musculus (house mouse) ]

    Gene ID: 319909, updated on 5-Mar-2024

    Summary

    Official Symbol
    Ism1provided by MGI
    Official Full Name
    isthmin 1, angiogenesis inhibitorprovided by MGI
    Primary source
    MGI:MGI:2442963
    See related
    Ensembl:ENSMUSG00000074766 AllianceGenome:MGI:2442963
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Ism; 5430433G21Rik
    Summary
    Involved in negative regulation of angiogenesis. Predicted to be located in extracellular region. Is expressed in several structures, including brain; eye; immune system; limb long bone; and lung. Orthologous to human ISM1 (isthmin 1). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in lung adult (RPKM 22.8), adrenal adult (RPKM 12.2) and 9 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See Ism1 in Genome Data Viewer
    Location:
    2 F3; 2 69.06 cM
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (139515169..139600500)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (139673359..139758581)

    Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene ADP/ATP translocase 2 pseudogene Neighboring gene serine palmitoyltransferase, long chain base subunit 3 Neighboring gene STARR-seq mESC enhancer starr_05833 Neighboring gene STARR-seq mESC enhancer starr_05835 Neighboring gene STARR-seq mESC enhancer starr_05836 Neighboring gene STARR-seq mESC enhancer starr_05837 Neighboring gene STARR-seq mESC enhancer starr_05838 Neighboring gene STARR-seq mESC enhancer starr_05839 Neighboring gene taspase, threonine aspartase 1 Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:139750776-139750959 Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:139760469-139760763 Neighboring gene STARR-positive B cell enhancer mm9_chr2:139792158-139792459 Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:139867947-139868134 Neighboring gene STARR-positive B cell enhancer ABC_E4503 Neighboring gene ribosomal protein S19, pseudogene 7

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

    Markers

    Clone Names

    • RP23-296P2.1, 5430433G21Rik

    Gene Ontology Provided by MGI

    Process Evidence Code Pubs
    involved_in negative regulation of angiogenesis IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    involved_in negative regulation of angiogenesis IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    isthmin-1
    Names
    isthmin 1 homolog

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001276489.2NP_001263418.1  isthmin-1 precursor

      Status: VALIDATED

      Source sequence(s)
      AL928831
      Consensus CDS
      CCDS50730.2
      UniProtKB/Swiss-Prot
      A2ATD1
      UniProtKB/TrEMBL
      V9GXR4
      Related
      ENSMUSP00000139280.2, ENSMUST00000184404.8
      Conserved Domains (2) summary
      smart00723
      Location:286449
      AMOP; Adhesion-associated domain present in MUC4 and other proteins
      smart00209
      Location:218259
      TSP1; Thrombospondin type 1 repeats

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000068.8 Reference GRCm39 C57BL/6J

      Range
      139515169..139600500
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036162293.1XP_036018186.1  isthmin-1 isoform X2

      Conserved Domains (1) summary
      smart00209
      Location:218259
      TSP1; Thrombospondin type 1 repeats
    2. XM_036162292.1XP_036018185.1  isthmin-1 isoform X1

      Conserved Domains (1) summary
      smart00209
      Location:218259
      TSP1; Thrombospondin type 1 repeats

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001126490.1: Suppressed sequence

      Description
      NM_001126490.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.