snx15 sorting nexin 15 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: snx15provided by ZNC
Official Full Name: sorting nexin 15provided by ZNC
Primary source: ZFIN:ZDB-GENE-040426-1377
See related: Ensembl:ENSDARG00000020397 AllianceGenome:ZFIN:ZDB-GENE-040426-1377
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: zgc:64136
Summary: Predicted to enable phosphatidylinositol binding activity. Predicted to be active in early endosome. Is expressed in several structures, including alar plate midbrain region; immature eye; myotome; nervous system; and pharyngeal arch 3-7 skeleton. Orthologous to human SNX15 (sorting nexin 15). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 7

Exon count:: 8

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	7	NC_007118.7 (19954507..19966369, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	7	NC_007118.6 (19702539..19714401, complement)

Chromosome 7 - NC_007118.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

G39315 (e-PCR)
- UniSTS:40106

fi44f10.y1 (e-PCR)
- UniSTS:197550

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables phosphatidylinositol binding	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: sorting nexin-15

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001111237.1 → NP_001104707.1 sorting nexin-15

See identical proteins and their annotated locations for NP_001104707.1

Status: PROVISIONAL

Source sequence(s)

BC155203

UniProtKB/TrEMBL

A0A2R8QIR6, A9JT54, B7ZUT1

Related

ENSDARP00000015938.3, ENSDART00000010932.5

Conserved Domains (2) summary

cd07288
Location:10 → 127

PX_SNX15; The phosphoinositide binding Phox Homology domain of Sorting Nexin 15

cd02677
Location:321 → 395

MIT_SNX15; MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.