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    zgc:113208 zgc:113208 [ Danio rerio (zebrafish) ]

    Gene ID: 550591, updated on 27-Mar-2024

    Summary

    Official Symbol
    zgc:113208provided by ZNC
    Official Full Name
    zgc:113208provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-050417-450
    See related
    Ensembl:ENSDARG00000035610 AllianceGenome:ZFIN:ZDB-GENE-050417-450
    Gene type
    protein coding
    RefSeq status
    PREDICTED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    wu:fb94c06; wu:fe14c09
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See zgc:113208 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 5 NC_007116.7 (22605847..22619879, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 5 NC_007116.6 (22102047..22117664, complement)

    Chromosome 5 - NC_007116.7Genomic Context describing neighboring genes Neighboring gene caspase 22, apoptosis-related cysteine peptidase Neighboring gene non-POU domain containing, octamer-binding Neighboring gene melatonin receptor 1C Neighboring gene vacuolar ATPase assembly factor VMA21

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General gene information

    Markers

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    uncharacterized protein LOC550591

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001017892.1NP_001017892.1  uncharacterized protein LOC550591

      See identical proteins and their annotated locations for NP_001017892.1

      Status: PREDICTED

      Source sequence(s)
      BC093435
      UniProtKB/TrEMBL
      A0A8M1N5U4, Q566N6
      Related
      ENSDARP00000051622.3, ENSDART00000051623.5

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007116.7 Reference GRCz11 Primary Assembly

      Range
      22605847..22619879 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394573.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      125964..141817 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)