spon2a spondin 2a, extracellular matrix protein [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: spon2aprovided by ZNC
Official Full Name: spondin 2a, extracellular matrix proteinprovided by ZNC
Primary source: ZFIN:ZDB-GENE-990415-160
See related: Ensembl:ENSDARG00000025465 AllianceGenome:ZFIN:ZDB-GENE-990415-160
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: mindin1
Summary: Predicted to enable metal ion binding activity. Predicted to be involved in cell adhesion. Located in extracellular matrix. Is expressed in axial mesoderm; central nervous system; hypochord; notochord; and presumptive hypochord. Orthologous to human SPON2 (spondin 2). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: all
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Genomic context

Location:: chromosome: 14

Exon count:: 6

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	14	NC_007125.7 (21861099..21900471)
105	previous assembly	GRCz10 (GCF_000002035.5)	14	NC_007125.6 (21563854..21603226)

Chromosome 14 - NC_007125.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

fc44a03.x1 (e-PCR)
- UniSTS:193871

mindin1 (e-PCR)
- UniSTS:186990

fc23d08.x1 (e-PCR)
- UniSTS:193148

Z6804 (e-PCR)
- UniSTS:204680

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables metal ion binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in cell adhesion	IBA Inferred from Biological aspect of Ancestor more info
acts_upstream_of_or_within cell adhesion	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
is_active_in extracellular matrix	IBA Inferred from Biological aspect of Ancestor more info
located_in extracellular matrix	IDA Inferred from Direct Assay more info
located_in extracellular region	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: spondin-2a

Names: etID309957.14

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.