srsf10b serine and arginine rich splicing factor 10b [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: srsf10bprovided by ZNC
Official Full Name: serine and arginine rich splicing factor 10bprovided by ZNC
Primary source: ZFIN:ZDB-GENE-040426-1415
See related: Ensembl:ENSDARG00000086411 AllianceGenome:ZFIN:ZDB-GENE-040426-1415
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: zgc:65772; zgc:77372
Summary: Predicted to enable RNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be active in cytoplasm and nuclear speck. Orthologous to several human genes including SRSF10 (serine and arginine rich splicing factor 10). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: all
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Genomic context

Location:: chromosome: 17

Exon count:: 6

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	17	NC_007128.7 (53427988..53434318)
105	previous assembly	GRCz10 (GCF_000002035.5)	17	NC_007128.6 (53313052..53319382)

Chromosome 17 - NC_007128.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables RNA binding	IBA Inferred from Biological aspect of Ancestor more info
enables RNA binding	IEA Inferred from Electronic Annotation more info
enables nucleic acid binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in mRNA splicing, via spliceosome	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
is_active_in nuclear speck	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: serine and arginine rich splicing factor 10b

Names: serine/arginine-rich splicing factor 10b

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_200533.2 → NP_956827.1 serine and arginine rich splicing factor 10b

See identical proteins and their annotated locations for NP_956827.1

Status: PROVISIONAL

Source sequence(s)

BC066442

UniProtKB/TrEMBL

Q6NYW0, Q7SZS0

Related

ENSDARP00000091866.3, ENSDART00000101091.5

Conserved Domains (2) summary

COG0724
Location:6 → 92

RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]

cd12559
Location:10 → 93

RRM_SRSF10; RNA recognition motif in serine/arginine-rich splicing factor 10 (SRSF10) and similar proteins