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    D130020L05Rik RIKEN cDNA D130020L05 gene [ Mus musculus (house mouse) ]

    Gene ID: 319760, updated on 8-Feb-2024

    Summary

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    Official Symbol
    D130020L05Rikprovided by MGI
    Official Full Name
    RIKEN cDNA D130020L05 geneprovided by MGI
    Primary source
    MGI:MGI:2450270
    See related
    Ensembl:ENSMUSG00000097121 AllianceGenome:MGI:2450270
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    9430007L23Rik
    Expression
    Ubiquitous expression in testis adult (RPKM 20.2), adrenal adult (RPKM 10.6) and 27 other tissues See more
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    Genomic context

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    See D130020L05Rik in Genome Data Viewer
    Location:
    12 E; 12 51.19 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (101048710..101055186)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (101082451..101088927)

    Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene coiled-coil domain containing 88C Neighboring gene STARR-positive B cell enhancer ABC_E8502 Neighboring gene microRNA 1190 Neighboring gene protein phosphatase 4 regulatory subunit 3A Neighboring gene predicted gene, 47639 Neighboring gene STARR-seq mESC enhancer starr_33083 Neighboring gene STARR-seq mESC enhancer starr_33084 Neighboring gene myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 10 pseudogene 2 Neighboring gene kinesin family member 4, pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Mutagenesis of diploid mammalian genes by gene entrapment. Lin Q, et al. Nucleic Acids Res, 2006. PMID 17062627, Free PMC Article
    2. EUCOMM--the European conditional mouse mutagenesis program. Friedel RH, et al. Brief Funct Genomic Proteomic, 2007 Sep. PMID 17967808
    3. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
    4. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
    5. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article

    See all (13) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_038047.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) is the longest transcript.
      Source sequence(s)
      AK047073, AK087910, BU939156

    2. NR_038048.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks an internal exon, as compared to variant 1.
      Source sequence(s)
      AK047073, AK087910, BU939156

    3. NR_038049.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) lacks two internal exons, as compared to variant 1.
      Source sequence(s)
      AK047073, AK087910, BX512124
      Related
      ENSMUST00000180800.2

    4. NR_038050.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (4) has an additional segment in the 5' region and lacks an exon in the 3' region, as compared to variant 1.
      Source sequence(s)
      AC131759

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000078.7 Reference GRCm39 C57BL/6J

      Range
      101048710..101055186
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_176997.2: Suppressed sequence

      Description
      NM_176997.2: This RefSeq was permanently suppressed because it is now thought that this gene does not encode a protein.
    Nucleotide Protein Strain
    Heading Accession and Version

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