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    LOC542602 low molecular weight heat shock protein precursor [ Zea mays ]

    Gene ID: 542602, updated on 18-Aug-2023

    Summary

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    Gene symbol
    LOC542602
    Gene description
    low molecular weight heat shock protein precursor
    Locus tag
    ZEAMMB73_Zm00001d052194
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Zea mays
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
    Also known as
    hsp22; GRMZM2G007729
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    Genomic context

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    See LOC542602 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    103 current Zm-B73-REFERENCE-NAM-5.0 (GCF_902167145.1) 4 NC_050099.1 (184768121..184769306, complement)
    102.20200423 previous assembly B73 RefGen_v4 (GCF_000005005.2) 4 NC_024462.2 (182772609..182773794, complement)

    Chromosome 4 - NC_050099.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100193615 Neighboring gene LMBR1-like conserved region family protein Neighboring gene uncharacterized LOC103654237 Neighboring gene uncharacterized LOC103654238

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Heat-stress response of maize mitochondria. Lund AA, et al. Plant Physiol, 1998 Mar. PMID 9501143, Free PMC Article
    2. Characterization of the maize endosperm transcriptome and its comparison to the rice genome. Lai J, et al. Genome Res, 2004 Oct. PMID 15466291, Free PMC Article
    3. Anchoring 9,371 maize expressed sequence tagged unigenes to the bacterial artificial chromosome contig map by two-dimensional overgo hybridization. Gardiner J, et al. Plant Physiol, 2004 Apr. PMID 15020742, Free PMC Article
    4. The B73 maize genome: complexity, diversity, and dynamics. Schnable PS, et al. Science, 2009 Nov 20. PMID 19965430
    5. Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs. Soderlund C, et al. PLoS Genet, 2009 Nov. PMID 19936069, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    low molecular weight heat shock protein precursor
    Names
    23.6 kDa heat shock protein mitochondrial
    heat shock 22 kDa protein
    heat shock proteinLow molecular weight heat shock proteinMitochondrial small heat shock protein 22
    small heat shock protein 22

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001112137.1 → NP_001105607.1  low molecular weight heat shock protein precursor

      See identical proteins and their annotated locations for NP_001105607.1

      Status: PROVISIONAL

      Source sequence(s)
      AF035460
      UniProtKB/TrEMBL
      A0A3L6F5U7, B6T649, O64960
      Conserved Domains (1) summary
      cd06464
      Location:122 → 195
      ACD_sHsps-like; Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally ...

    RefSeqs of Annotated Genomes: Zea mays Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

    Genomic

    1. NC_050099.1 Reference Zm-B73-REFERENCE-NAM-5.0 Primary Assembly

      Range
      184768121..184769306 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008679574.2 → XP_008677796.1  low molecular weight heat shock protein precursor isoform X1

      See identical proteins and their annotated locations for XP_008677796.1

      UniProtKB/TrEMBL
      B4FQS7, B6T649
      Conserved Domains (2) summary
      cd06464
      Location:123 → 196
      ACD_sHsps-like; Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps). sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally ...
      COG0071
      Location:121 → 196
      IbpA; Molecular chaperone IbpA, HSP20 family [Posttranslational modification, protein turnover, chaperones]
    Nucleotide Protein
    Heading Accession and Version

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