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    Cimip3 ciliary microtubule inner protein 3 [ Mus musculus (house mouse) ]

    Gene ID: 75462, updated on 16-Mar-2024

    Summary

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    Official Symbol
    Cimip3provided by MGI
    Official Full Name
    ciliary microtubule inner protein 3provided by MGI
    Primary source
    MGI:MGI:1922712
    See related
    Ensembl:ENSMUSG00000047150 AllianceGenome:MGI:1922712
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    1700001C19Rik
    Expression
    Biased expression in testis adult (RPKM 50.7) and liver adult (RPKM 2.8) See more
    Orthologs
    human all
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    Genomic context

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    See Cimip3 in Genome Data Viewer
    Location:
    17 C; 17 23.12 cM
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (47723659..47748690, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (47412734..47437765, complement)

    Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_42700 Neighboring gene guanylate cyclase activator 1B Neighboring gene guanylate cyclase activator 1a (retina) Neighboring gene Morf4 family associated protein 1 pseudogene Neighboring gene expressed sequence AI661453 Neighboring gene STARR-seq mESC enhancer starr_42703 Neighboring gene STARR-positive B cell enhancer ABC_E9168 Neighboring gene CapStarr-seq enhancer MGSCv37_chr17:47641447-47641630 Neighboring gene CapStarr-seq enhancer MGSCv37_chr17:47641910-47642097 Neighboring gene TATA-box binding protein associated factor 8 Neighboring gene STARR-positive B cell enhancer ABC_E5616 Neighboring gene STARR-seq mESC enhancer starr_42710 Neighboring gene STARR-positive B cell enhancer ABC_E10958 Neighboring gene VISTA enhancer mm1691 Neighboring gene cyclin D3 Neighboring gene CapStarr-seq enhancer MGSCv37_chr17:47668330-47668738 Neighboring gene CapStarr-seq enhancer MGSCv37_chr17:47679075-47679320 Neighboring gene predicted gene, 41590

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    putative uncharacterized protein CIMIP3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001172091.1 → NP_001165562.1  putative uncharacterized protein CIMIP3 isoform 2

      See identical proteins and their annotated locations for NP_001165562.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) represents use of an alternate promoter and 5' UTR and uses a distinct translation start site, compared to variant 1. The resulting isoform (2) has a shorter and distinct N-terminus, compared to isoform 1.
      Source sequence(s)
      AC112683, AK005579
      UniProtKB/TrEMBL
      Q9DAS0

    2. NM_001347584.1 → NP_001334513.1  putative uncharacterized protein CIMIP3 isoform 3

      Status: VALIDATED

      Source sequence(s)
      AC112683
      Consensus CDS
      CCDS84317.1
      UniProtKB/TrEMBL
      E9Q6U5
      Related
      ENSMUSP00000072887.7, ENSMUST00000073143.7

    3. NM_029296.2 → NP_083572.1  putative uncharacterized protein CIMIP3 isoform 1

      See identical proteins and their annotated locations for NP_083572.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
      Source sequence(s)
      AC112683, AC139214
      Consensus CDS
      CCDS28849.1
      UniProtKB/TrEMBL
      Q8K168
      Related
      ENSMUSP00000050873.9, ENSMUST00000061885.9
      Conserved Domains (1) summary
      pfam15498
      Location:13 → 68
      Dendrin; Nephrin and CD2AP-binding protein, Dendrin

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000083.7 Reference GRCm39 C57BL/6J

      Range
      47723659..47748690 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030250127.1 → XP_030105987.1  putative uncharacterized protein CIMIP3 isoform X2

      Conserved Domains (1) summary
      pfam15498
      Location:11 → 66
      Dendrin; Nephrin and CD2AP-binding protein, Dendrin

    2. XM_030250126.1 → XP_030105986.1  putative uncharacterized protein CIMIP3 isoform X1

      Conserved Domains (1) summary
      pfam15498
      Location:15 → 70
      Dendrin; Nephrin and CD2AP-binding protein, Dendrin
    Nucleotide Protein Strain
    Heading Accession and Version

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