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    spag17 sperm associated antigen 17 [ Danio rerio (zebrafish) ]

    Gene ID: 561115, updated on 27-Mar-2024

    Summary

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    Official Symbol
    spag17provided by ZNC
    Official Full Name
    sperm associated antigen 17provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-081104-362
    See related
    AllianceGenome:ZFIN:ZDB-GENE-081104-362
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    si:dkey-208b23.5
    Summary
    Predicted to be involved in axonemal central apparatus assembly and epithelial cilium movement involved in extracellular fluid movement. Predicted to be active in axonemal central apparatus. Human ortholog(s) of this gene implicated in spermatogenic failure. Orthologous to human SPAG17 (sperm associated antigen 17). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    human mouse all
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    Genomic context

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    See spag17 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    41
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 8 NC_007119.7 (13030782..13064646, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 8 NC_007119.6 (12993077..13026811, complement)

    Chromosome 8 - NC_007119.7Genomic Context describing neighboring genes Neighboring gene choline/ethanolamine phosphotransferase 1a Neighboring gene novel protein similar to H.sapiens TMEM77, transmembrane protein 77 (TMEM77) Neighboring gene DENN/MADD domain containing 2Da Neighboring gene uncharacterized LOC101886593 Neighboring gene uncharacterized LOC103911475 Neighboring gene SAP30 binding protein Neighboring gene integrin, beta 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Bisexual Fertile Triploid Zebrafish (Danio rerio): a Rare Case. Peng L, et al. Mar Biotechnol (NY), 2020 Jun. PMID 32307628
    2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    5. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    sperm-associated antigen 17

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007119.7 Reference GRCz11 Primary Assembly

      Range
      13030782..13064646 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009303821.3 → XP_009302096.1  sperm-associated antigen 17 isoform X2

      UniProtKB/TrEMBL
      A0A8M3B4R5

    2. XM_021478375.1 → XP_021334050.1  sperm-associated antigen 17 isoform X3

      UniProtKB/TrEMBL
      A0A8M9QIU2

    3. XM_009303819.3 → XP_009302094.1  sperm-associated antigen 17 isoform X1

      UniProtKB/TrEMBL
      A0A8M3AUZ6
    Nucleotide Protein
    Heading Accession and Version

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