Xlr3c X-linked lymphocyte-regulated 3C [Mus musculus (house mouse)] - Gene

Summary

Official Symbol: Xlr3cprovided by MGI
Official Full Name: X-linked lymphocyte-regulated 3Cprovided by MGI
Primary source: MGI:MGI:3047103
See related: Ensembl:ENSMUSG00000058147 AllianceGenome:MGI:3047103
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Mus musculus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as: Xlr3b
Summary: Predicted to be involved in meiotic cell cycle and spermatid development. Predicted to be active in synaptonemal complex. Orthologous to human FAM9C (family with sequence similarity 9 member C). [provided by Alliance of Genome Resources, Apr 2022]
Expression: Biased expression in placenta adult (RPKM 9.6), liver E18 (RPKM 2.0) and 11 other tissues See more
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Genomic context

Location:: X A7.3; X 37.29 cM

Exon count:: 11

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCm39 (GCF_000001635.27)	X	NC_000086.8 (72298144..72309178, complement)
108.20200622	previous assembly	GRCm38.p6 (GCF_000001635.26)	X	NC_000086.7 (73254538..73265576, complement)

Chromosome X - NC_000086.8 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Mouse ENCODE transcriptome data
Description: RNA profiling data sets generated by the Mouse ENCODE project.
BioProject: PRJNA66167
Publication: PMID 25409824
Analysis date: n/a

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Our findings confirm the existence of X-linked imprinted effects on cognitive processes and identify a new maternally expressed imprinted gene candidate on the X chromosome, Xlr3b, which may be of importance in mediating the behavioral effects.
Title: Xlr3b is a new imprinted candidate for X-linked parent-of-origin effects on cognitive function in mice.

Submit: New GeneRIF Correction

General gene information

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Markers

BE457747 (e-PCR)
- UniSTS:209524

Xlr3a (e-PCR), detects polymorphism
- UniSTS:496787

Xlr3b (e-PCR), detects polymorphism
- UniSTS:496788

Gene Ontology Provided by MGI

Function	Evidence Code	Pubs
enables molecular_function	ND No biological Data available more info

Process	Evidence Code	Pubs
involved_in meiotic cell cycle	IBA Inferred from Biological aspect of Ancestor more info
involved_in spermatid development	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
is_active_in synaptonemal complex	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: X-linked lymphocyte-regulated protein 3C

Names: X-linked B-cell surface antigen 3B; X-linked lymphocyte-regulated 3B; XLR-related protein A12

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.