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    • Showing Current items.

    bsdc1 BSD domain containing 1 [ Danio rerio (zebrafish) ]

    Gene ID: 794882, updated on 27-Mar-2024

    Summary

    Official Symbol
    bsdc1provided by ZNC
    Official Full Name
    BSD domain containing 1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040905-1
    See related
    Ensembl:ENSDARG00000052623 AllianceGenome:ZFIN:ZDB-GENE-040905-1
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fb51h12; wu:fb51h12; zgc:100785
    Summary
    Predicted to be active in cytoplasm. Orthologous to human BSDC1 (BSD domain containing 1). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    NEW
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    Genomic context

    See bsdc1 in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 13 NC_007124.7 (45980308..46000116)
    105 previous assembly GRCz10 (GCF_000002035.5) 13 NC_007124.6 (45843584..45863392)

    Chromosome 13 - NC_007124.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110437869 Neighboring gene oligodendrocyte transcription factor 4 Neighboring gene uncharacterized LOC103912036 Neighboring gene uncharacterized LOC103912037 Neighboring gene MARCKS-like 1a

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General gene information

    Markers

    Clone Names

    • FLJ10276, MGC100785, MGC174346

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    General protein information

    Preferred Names
    BSD domain-containing protein 1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001004108.2NP_001004108.2  BSD domain-containing protein 1

      See identical proteins and their annotated locations for NP_001004108.2

      Status: PROVISIONAL

      Source sequence(s)
      BC155161
      UniProtKB/Swiss-Prot
      A2BIJ3, Q68EL9
      UniProtKB/TrEMBL
      A9JT15
      Related
      ENSDARP00000003318.8, ENSDART00000005195.10
      Conserved Domains (1) summary
      pfam03909
      Location:145201
      BSD; BSD domain

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007124.7 Reference GRCz11 Primary Assembly

      Range
      45980308..46000116
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCz11 ALT_DRER_TU_2

    Genomic

    1. NW_018395310.1 Reference GRCz11 ALT_DRER_TU_2

      Range
      208499..226820
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)