U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Zfp954 zinc finger protein 954 [ Mus musculus (house mouse) ]

    Gene ID: 232853, updated on 8-Feb-2024

    Summary

    Official Symbol
    Zfp954provided by MGI
    Official Full Name
    zinc finger protein 954provided by MGI
    Primary source
    MGI:MGI:1917764
    See related
    Ensembl:ENSMUSG00000062116 AllianceGenome:MGI:1917764
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    8030437F07; 5730403M16Rik
    Summary
    Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in early conceptus; genitourinary system; nervous system; and sensory organ. Orthologous to human ZNF419 (zinc finger protein 419) and ZNF773 (zinc finger protein 773). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Ubiquitous expression in CNS E18 (RPKM 6.2), large intestine adult (RPKM 5.6) and 28 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Zfp954 in Genome Data Viewer
    Location:
    7 A1; 7 4.13 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (7117682..7124475, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (7114683..7121476, complement)

    Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene ARP2 actin-related protein 2 homolog pseudogene Neighboring gene zinc finger protein 954 pseudogene Neighboring gene STARR-positive B cell enhancer ABC_E2222 Neighboring gene STARR-seq mESC enhancer starr_18003 Neighboring gene zinc finger protein 773 Neighboring gene STARR-seq mESC enhancer starr_18004 Neighboring gene STARR-seq mESC enhancer starr_18005 Neighboring gene vomeronasal 2, receptor, pseudogene 35

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General protein information

    Preferred Names
    uncharacterized protein LOC232853

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_172738.3NP_766326.2  uncharacterized protein LOC232853

      See identical proteins and their annotated locations for NP_766326.2

      Status: VALIDATED

      Source sequence(s)
      AK033116, BC055688, BY124760, BY626368
      Consensus CDS
      CCDS51991.1
      UniProtKB/TrEMBL
      Q7TNU5
      Related
      ENSMUSP00000072585.4, ENSMUST00000056246.8
      Conserved Domains (6) summary
      smart00349
      Location:4295
      KRAB; krueppel associated box
      COG5048
      Location:252387
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:200220
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam00096
      Location:364386
      zf-C2H2; Zinc finger, C2H2 type
      pfam01352
      Location:4281
      KRAB; KRAB box
      pfam13465
      Location:241265
      zf-H2C2_2; Zinc-finger double domain

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000073.7 Reference GRCm39 C57BL/6J

      Range
      7117682..7124475 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)