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    Ttc33 tetratricopeptide repeat domain 33 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 294774, updated on 3-Apr-2024

    Summary

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    Official Symbol
    Ttc33provided by RGD
    Official Full Name
    tetratricopeptide repeat domain 33provided by RGD
    Primary source
    RGD:1564042
    See related
    Ensembl:ENSRNOG00000013217 AllianceGenome:RGD:1564042
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1564042
    Summary
    Orthologous to human TTC33 (tetratricopeptide repeat domain 33). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Brain (RPKM 175.5), Muscle (RPKM 153.6) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Ttc33 in Genome Data Viewer
    Location:
    2q16
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 2 NC_086020.1 (56007377..56054312)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 2 NC_051337.1 (54279906..54326851)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 2 NC_005101.4 (54897320..54944241)

    Chromosome 2 - NC_086020.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA, C/D box 72 Neighboring gene ribosomal protein L37 Neighboring gene protein kinase AMP-activated catalytic subunit alpha 1 Neighboring gene small nuclear ribonucleoprotein polypeptide G, pseudogene 5 Neighboring gene uncharacterized LOC120100730 Neighboring gene prostaglandin E receptor 4 Neighboring gene uncharacterized LOC103691475

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    tetratricopeptide repeat protein 33

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001106414.1 → NP_001099884.1  tetratricopeptide repeat protein 33

      See identical proteins and their annotated locations for NP_001099884.1

      Status: PROVISIONAL

      Source sequence(s)
      CH474048
      UniProtKB/TrEMBL
      A0A8I6ANT7, A6KGE1
      Conserved Domains (2) summary
      COG4783
      Location:71 → 164
      YfgC; Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
      sd00006
      Location:59 → 87
      TPR; TPR repeat [structural motif]

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086020.1 Reference GRCr8

      Range
      56007377..56054312
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006231994.4 → XP_006232056.1  tetratricopeptide repeat protein 33 isoform X2

      See identical proteins and their annotated locations for XP_006232056.1

      UniProtKB/TrEMBL
      A0A8I6ANT7, A6KGE1
      Related
      ENSRNOP00000097937.1
      Conserved Domains (2) summary
      COG4783
      Location:71 → 164
      YfgC; Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
      sd00006
      Location:59 → 87
      TPR; TPR repeat [structural motif]

    2. XM_006231993.5 → XP_006232055.3  tetratricopeptide repeat protein 33 isoform X1

      UniProtKB/TrEMBL
      D3ZBZ9

    3. XM_063281519.1 → XP_063137589.1  tetratricopeptide repeat protein 33 isoform X2

      UniProtKB/TrEMBL
      A6KGE1

    4. XM_063281518.1 → XP_063137588.1  tetratricopeptide repeat protein 33 isoform X2

      UniProtKB/TrEMBL
      A6KGE1
    Nucleotide Protein Strain
    Heading Accession and Version

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