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    msl1b MSL complex subunit 1b [ Danio rerio (zebrafish) ]

    Gene ID: 563262, updated on 27-Mar-2024

    Summary

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    Official Symbol
    msl1bprovided by ZNC
    Official Full Name
    MSL complex subunit 1bprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-030131-4491
    See related
    Ensembl:ENSDARG00000090223 AllianceGenome:ZFIN:ZDB-GENE-030131-4491
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    fd10h03; wu:fd10h03; si:dkey-245i6.2
    Summary
    Predicted to enable chromatin binding activity. Predicted to be involved in histone H4-K16 acetylation. Predicted to be part of MSL complex. Orthologous to human MSL1 (MSL complex subunit 1). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    all
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    Genomic context

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    See msl1b in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 12 NC_007123.7 (27022285..27027027)
    105 previous assembly GRCz10 (GCF_000002035.5) 12 NC_007123.6 (26931132..26935358)

    Chromosome 12 - NC_007123.7Genomic Context describing neighboring genes Neighboring gene zinc finger E-box binding homeobox 1b Neighboring gene zinc finger protein 438 Neighboring gene charged multivesicular body protein 2A Neighboring gene fibrosin

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    3. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables chromatin binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    part_of MSL complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of MSL complex IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    male-specific lethal 1 homolog
    Names
    male-specific lethal 1 homolog b

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007123.7 Reference GRCz11 Primary Assembly

      Range
      27022285..27027027
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021480340.1 → XP_021336015.1  male-specific lethal 1 homolog isoform X1

      UniProtKB/TrEMBL
      A0A8M9QMZ2
      Conserved Domains (1) summary
      pfam15275
      Location:388 → 506
      PEHE; PEHE domain

    2. XM_021480339.1 → XP_021336014.1  male-specific lethal 1 homolog isoform X1

      UniProtKB/TrEMBL
      A0A8M9QMZ2
      Conserved Domains (1) summary
      pfam15275
      Location:388 → 506
      PEHE; PEHE domain

    3. XM_005156303.4 → XP_005156360.1  male-specific lethal 1 homolog isoform X2

      See identical proteins and their annotated locations for XP_005156360.1

      UniProtKB/TrEMBL
      A0A2R8QEA0, A0A8M2B2C1
      Related
      ENSDARP00000153193.1, ENSDART00000183881.1
      Conserved Domains (1) summary
      pfam15275
      Location:362 → 487
      PEHE; PEHE domain

    4. XM_686625.9 → XP_691717.1  male-specific lethal 1 homolog isoform X3

      UniProtKB/TrEMBL
      A0A8N7T631, U3JA58
      Related
      ENSDARP00000127123.1, ENSDART00000152975.3
      Conserved Domains (1) summary
      pfam15275
      Location:362 → 480
      PEHE; PEHE domain
    Nucleotide Protein
    Heading Accession and Version

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