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    anxa1d annexin A1d [ Danio rerio (zebrafish) ]

    Gene ID: 550268, updated on 11-Apr-2024

    Summary

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    Official Symbol
    anxa1dprovided by ZNC
    Official Full Name
    annexin A1dprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-050417-72
    See related
    Ensembl:ENSDARG00000098481 AllianceGenome:ZFIN:ZDB-GENE-050417-72
    Gene type
    protein coding
    RefSeq status
    PREDICTED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    zgc:110283; CH73-348L8.3
    Summary
    Predicted to enable calcium ion binding activity; calcium-dependent phospholipid binding activity; and phospholipase A2 inhibitor activity. Predicted to be involved in several processes, including animal organ development; regulation of T cell activation; and regulation of cell migration. Predicted to be located in several cellular components, including basolateral plasma membrane; cilium; and lateral plasma membrane. Predicted to be active in cytoplasm; extracellular space; and plasma membrane. [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    all
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    Genomic context

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    See anxa1d in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 5 NC_007116.7 (64994083..65004791, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 5 NC_007116.6 (64309014..64315794, complement)

    Chromosome 5 - NC_007116.7Genomic Context describing neighboring genes Neighboring gene prostaglandin-endoperoxide synthase 1 Neighboring gene roundabout homolog 1-like Neighboring gene annexin A1c Neighboring gene annexin A1b

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Vascular defects of DYRK1A knockouts are ameliorated by modulating calcium signaling in zebrafish. Cho HJ, et al. Dis Model Mech, 2019 May 23. PMID 31043432, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables calcium-dependent phospholipid binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables calcium-dependent phospholipid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables phosphatidylserine binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in cellular response to glucocorticoid stimulus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in phagocytosis IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in signal transduction IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in vesicle membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC550268

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001017605.1 → NP_001017605.1  uncharacterized protein LOC550268

      See identical proteins and their annotated locations for NP_001017605.1

      Status: PREDICTED

      Source sequence(s)
      BC092847
      UniProtKB/TrEMBL
      Q568I4
      Related
      ENSDARP00000147401.1, ENSDART00000180023.1
      Conserved Domains (1) summary
      pfam00191
      Location:271 → 336
      Annexin; Annexin

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007116.7 Reference GRCz11 Primary Assembly

      Range
      64994083..65004791 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021476151.1 → XP_021331826.1  uncharacterized protein LOC550268 isoform X1

      UniProtKB/TrEMBL
      A0A8M9Q8L1
      Related
      ENSDARP00000140158.2, ENSDART00000169287.3
      Conserved Domains (1) summary
      pfam00191
      Location:271 → 336
      Annexin

    2. XM_021476152.1 → XP_021331827.1  uncharacterized protein LOC550268 isoform X2

      UniProtKB/TrEMBL
      A0A8M9PK36
      Conserved Domains (1) summary
      pfam00191
      Location:165 → 230
      Annexin
    Nucleotide Protein
    Heading Accession and Version

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