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    2900092C05Rik RIKEN cDNA 2900092C05 gene [ Mus musculus (house mouse) ]

    Gene ID: 73090, updated on 5-Mar-2024

    Summary

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    Official Symbol
    2900092C05Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 2900092C05 geneprovided by MGI
    Primary source
    MGI:MGI:1920340
    See related
    Ensembl:ENSMUSG00000030385 AllianceGenome:MGI:1920340
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Orthologous to human C19orf18 (chromosome 19 open reading frame 18). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Restricted expression toward testis adult (RPKM 3.5) See more
    Orthologs
    human all
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    Genomic context

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    See 2900092C05Rik in Genome Data Viewer
    Location:
    7 A1; 7 7.53 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (12246391..12290250)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (12512464..12556323)

    Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene vomeronasal 2, receptor, pseudogene 53 Neighboring gene STARR-seq mESC enhancer starr_18051 Neighboring gene zinc finger protein 606 Neighboring gene STARR-seq mESC enhancer starr_18052 Neighboring gene ribosomal protein L5 pseudogene Neighboring gene STARR-seq mESC enhancer starr_18053 Neighboring gene vomeronasal 2, receptor 53 Neighboring gene PC4 and SFRS1 interacting protein 1 pseudogene Neighboring gene vomeronasal 2, receptor 54

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Genome engineering uncovers 54 evolutionarily conserved and testis-enriched genes that are not required for male fertility in mice. Miyata H, et al. Proc Natl Acad Sci U S A, 2016 Jul 12. PMID 27357688, Free PMC Article
    2. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
    3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

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    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein C19orf18 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_028434.3 → NP_082710.2  uncharacterized protein C19orf18 homolog precursor

      See identical proteins and their annotated locations for NP_082710.2

      Status: VALIDATED

      Source sequence(s)
      BC087883
      Consensus CDS
      CCDS20811.1
      UniProtKB/TrEMBL
      Q5I0V9, Q9D6D4
      Related
      ENSMUSP00000032541.5, ENSMUST00000032541.5

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000073.7 Reference GRCm39 C57BL/6J

      Range
      12246391..12290250
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017312332.2 → XP_017167821.1  uncharacterized protein C19orf18 homolog isoform X1

      UniProtKB/TrEMBL
      Q9D6D4
      Conserved Domains (1) summary
      pfam17686
      Location:24 → 171
      DUF5534; Family of unknown function (DUF5534)
    Nucleotide Protein Strain
    Heading Accession and Version

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