U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Phgr1 proline/histidine/glycine-rich 1 [ Mus musculus (house mouse) ]

    Gene ID: 53906, updated on 5-Mar-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Phgr1provided by MGI
    Official Full Name
    proline/histidine/glycine-rich 1provided by MGI
    Primary source
    MGI:MGI:1858382
    See related
    Ensembl:ENSMUSG00000046804 AllianceGenome:MGI:1858382
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    1810007E14Rik
    Summary
    Orthologous to human PHGR1 (proline, histidine and glycine rich 1). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in colon adult (RPKM 3882.1), duodenum adult (RPKM 1151.7) and 3 other tissues See more
    Orthologs
    human all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Phgr1 in Genome Data Viewer
    Location:
    2 E5; 2 59.46 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (118603255..118608646)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (118772774..118778165)

    Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene InaF motif containing 2 Neighboring gene coiled-coil domain containing 9B Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:118588340-118588523 Neighboring gene STARR-positive B cell enhancer mm9_chr2:118590344-118590645 Neighboring gene predicted gene, 54146 Neighboring gene dispatched RND transporter family member 2 Neighboring gene predicted gene, 38629

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Putative assignment of ESTs to the genetic map by use of the SSLP database. Herron BJ, et al. Mamm Genome, 1998 Dec. PMID 9880682
    2. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    proline, histidine and glycine-rich protein 1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001145644.2 → NP_001139116.1  proline, histidine and glycine-rich protein 1

      Status: VALIDATED

      Source sequence(s)
      AK019007, BY707466
      Consensus CDS
      CCDS57182.1
      UniProtKB/Swiss-Prot
      Q8K0G7
      Related
      ENSMUSP00000135093.2, ENSMUST00000130293.8

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000068.8 Reference GRCm39 C57BL/6J

      Range
      118603255..118608646
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_025308.1: Suppressed sequence

      Description
      NM_025308.1: This RefSeq was permanently suppressed because currently there is support for the transcript, but not for the protein.
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8K0G7.1 GenPept UniProtKB/Swiss-Prot:Q8K0G7

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Chemical Information
    Molecular Biology Databases
    Research Materials
    Tools
    Miscellaneous