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    CRS1 maize chloroplast splicing factor-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831476, updated on 7-Sep-2023

    Summary

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    Gene symbol
    CRS1
    Gene description
    maize chloroplast splicing factor-like protein
    Primary source
    Araport:AT5G16180
    Locus tag
    AT5G16180
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    ARABIDOPSIS ORTHOLOG OF MAIZE CHLOROPLAST SPLICING FACTOR CRS1; ATCRS1; ortholog of maize chloroplast splicing factor CRS1; T21H19.100; T21H19_100
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    Genomic context

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    See CRS1 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    6
    Sequence:
    Chromosome: 5; NC_003076.8 (5279884..5283102)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene plastidic GLC translocator Neighboring gene uncharacterized protein Neighboring gene Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein Neighboring gene cellulose synthase like A11 Neighboring gene 50S ribosomal protein-like protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Arabidopsis orthologs of maize chloroplast splicing factors promote splicing of orthologous and species-specific group II introns. Asakura Y, et al. Plant Physiol, 2006 Dec. PMID 17071648, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. The mutant phenotype associated with T-DNA insertions in the Arabidopsis gene AtCRS1, encoding the ortholog of the maize chloroplast splicing factor CRS1, was examined.
      Title: Arabidopsis orthologs of maize chloroplast splicing factors promote splicing of orthologous and species-specific group II introns.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    NM_121623.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within Group II intron splicing IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    maize chloroplast splicing factor-like protein
    NP_197122.2
    • ortholog of maize chloroplast splicing factor CRS1 (CRS1); FUNCTIONS IN: RNA binding; INVOLVED IN: Group II intron splicing; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-binding, CRM domain (InterPro:IPR001890); BEST Arabidopsis thaliana protein match is: CRS1 / YhbY (CRM) domain-containing protein (TAIR:AT3G18390.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      5279884..5283102
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001343439.1 → NP_001332392.1  maize chloroplast splicing factor-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BGS4

    2. NM_121623.3 → NP_197122.2  maize chloroplast splicing factor-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_197122.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4KCP9, Q9LF10
      UniProtKB/TrEMBL
      A0A654G1G8
      Conserved Domains (3) summary
      smart01103
      Location:361 → 445
      CRS1_YhbY; Escherichia coli YhbY is associated with pre-50S ribosomal subunits, which implies a function in ribosome assembly
      pfam01985
      Location:214 → 290
      CRS1_YhbY; CRS1 / YhbY (CRM) domain
      cl19511
      Location:432 → 575
      DUF2317; Uncharacterized protein conserved in bacteria (DUF2317)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9LF10.2

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