hmgn7 high mobility group nucleosomal binding domain 7 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: hmgn7provided by ZNC
Official Full Name: high mobility group nucleosomal binding domain 7provided by ZNC
Primary source: ZFIN:ZDB-GENE-061215-23
See related: Ensembl:ENSDARG00000062326 AllianceGenome:ZFIN:ZDB-GENE-061215-23
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: fb74a08; wu:fb74a08; zgc:158409
Summary: Predicted to enable chromatin binding activity. Predicted to be involved in chromatin organization. Predicted to be located in chromatin. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: all
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Genomic context

Location:: chromosome: 5

Exon count:: 7

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	5	NC_007116.7 (22969565..22972775)
105	previous assembly	GRCz10 (GCF_000002035.5)	5	NC_007116.6 (22465765..22468975)

Chromosome 5 - NC_007116.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

fb74a08 (e-PCR)
- UniSTS:187460

fb74a08.x1 (e-PCR)
- UniSTS:191181

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables chromatin binding	IBA Inferred from Biological aspect of Ancestor more info
enables nucleosomal DNA binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in chromatin organization	IBA Inferred from Biological aspect of Ancestor more info

Component	Evidence Code	Pubs
part_of chromatin	IEA Inferred from Electronic Annotation more info
is_active_in nucleus	IBA Inferred from Biological aspect of Ancestor more info
located_in nucleus	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: high mobility group nucleosomal binding domain 7; nonhistone chromosomal protein HMG-14A-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001080033.2 → NP_001073502.1 high mobility group nucleosomal binding domain 7

See identical proteins and their annotated locations for NP_001073502.1

Status: VALIDATED

Source sequence(s)

BC128863, BI984515

UniProtKB/TrEMBL

A1A5Y7, A8E5A3

Related

ENSDARP00000084425.4, ENSDART00000089992.6

Conserved Domains (1) summary

pfam01101
Location:1 → 80

HMG14_17; HMG14 and HMG17

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

NC_007116.7 Reference GRCz11 Primary Assembly

Range

22969565..22972775

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_005165181.2 → XP_005165238.1 nonhistone chromosomal protein HMG-14A-like isoform X1

UniProtKB/TrEMBL

A0A8M2BCE7, E9QI01

Related

ENSDARP00000113935.1, ENSDART00000145477.2

Conserved Domains (1) summary

pfam01101
Location:2 → 92

HMG14_17; HMG14 and HMG17