si:dkey-238d18.10 si:dkey-238d18.10 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: si:dkey-238d18.10provided by ZNC
Official Full Name: si:dkey-238d18.10provided by ZNC
Primary source: ZFIN:ZDB-GENE-030131-8063
See related: AllianceGenome:ZFIN:ZDB-GENE-030131-8063
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: fj49c06; wu:fj49c06
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Genomic context

See si:dkey-238d18.10 in Genome Data Viewer

Location:: chromosome: 15

Exon count:: 10

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	15	NC_007126.7 (37972722..37977627)
105	previous assembly	GRCz10 (GCF_000002035.5)	15	NC_007126.6 (38064707..38074803)

Chromosome 15 - NC_007126.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Component	Evidence Code	Pubs
located_in membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: myeloid cell surface antigen CD33; si:dkey-238d18.10

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001423281.1 → NP_001410210.1 si:dkey-238d18.10

Status: VALIDATED

Source sequence(s)

CR944667

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

NC_007126.7 Reference GRCz11 Primary Assembly

Range

37972722..37977627

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_021466545.1 → XP_021322220.1 myeloid cell surface antigen CD33

UniProtKB/TrEMBL

A0A8M9PM04

Conserved Domains (1) summary

cl11960
Location:8 → 99

Ig; Immunoglobulin domain