U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    AA467197 expressed sequence AA467197 [ Mus musculus (house mouse) ]

    Gene ID: 433470, updated on 7-May-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    AA467197provided by MGI
    Official Full Name
    expressed sequence AA467197provided by MGI
    Primary source
    MGI:MGI:3034182
    See related
    Ensembl:ENSMUSG00000033213 AllianceGenome:MGI:3034182
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Nmes1; mir-147
    Summary
    Acts upstream of or within response to bacterium. Located in mitochondrion. Orthologous to human C15orf48 (chromosome 15 open reading frame 48). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in testis adult (RPKM 38.7), large intestine adult (RPKM 13.5) and 4 other tissues See more
    Orthologs
    human all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See AA467197 in Genome Data Viewer
    Location:
    2 E5; 2 60.64 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (122479807..122482996)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (122637887..122641076)

    Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene glycine amidinotransferase (L-arginine:glycine amidinotransferase) Neighboring gene STARR-positive B cell enhancer ABC_E9203 Neighboring gene STARR-positive B cell enhancer ABC_E7856 Neighboring gene AFG2 AAA ATPase homolog B Neighboring gene microRNA 147 Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:122478177-122478415 Neighboring gene STARR-seq mESC enhancer starr_05561 Neighboring gene STARR-positive B cell enhancer ABC_E10135 Neighboring gene STARR-positive B cell enhancer mm9_chr2:122493578-122493879 Neighboring gene solute carrier family 30 (zinc transporter), member 4 Neighboring gene RIKEN cDNA 4930417H01 gene

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Coxfa4l3, a novel mitochondrial electron transport chain Complex 4 subunit protein, switches from Coxfa4 during spermatogenesis. Endou M, et al. Mitochondrion, 2020 May. PMID 32045714
    2. Analysis of the methylation status of genes up-regulated by the demethylating agent, 5-aza-2'-deoxycytidine, in esophageal squamous cell carcinoma. Arai M, et al. Oncol Rep, 2008 Aug. PMID 18636205
    3. A novel gene, NMES1, downregulated in human esophageal squamous cell carcinoma. Zhou J, et al. Int J Cancer, 2002 Oct 1. PMID 12209954
    4. miR-147, a microRNA that is induced upon Toll-like receptor stimulation, regulates murine macrophage inflammatory responses. Liu G, et al. Proc Natl Acad Sci U S A, 2009 Sep 15. PMID 19721002, Free PMC Article
    5. Impact of lactobacilli on orally acquired listeriosis. Archambaud C, et al. Proc Natl Acad Sci U S A, 2012 Oct 9. PMID 23012479, Free PMC Article

    See all (17) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Nmes1 is a novel regulator of mucosal response influencing intestinal healing potential.
      Title: Nmes1 is a novel regulator of mucosal response influencing intestinal healing potential.
    2. Coxfa4l3, a novel mitochondrial electron transport chain Complex 4 subunit protein, switches from Coxfa4 during spermatogenesis.
      Title: Coxfa4l3, a novel mitochondrial electron transport chain Complex 4 subunit protein, switches from Coxfa4 during spermatogenesis.
    Submit: New GeneRIF Correction

    Variation

    Go to the top of the page Help

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Clone Names

    • MGC58382

    Gene Ontology Provided by MGI

    Process Evidence Code Pubs
    acts_upstream_of_or_within response to bacterium IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of mitochondrial respiratory chain complex IV IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in mitochondrion HDA PubMed 
    located_in nucleus ISO
    Inferred from Sequence Orthology
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    normal mucosa of esophagus-specific gene 1 protein
    Names
    normal mucosa of esophagus specific 1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001004174.2 → NP_001004174.1  normal mucosa of esophagus-specific gene 1 protein

      Status: VALIDATED

      Source sequence(s)
      AL772253
      Consensus CDS
      CCDS38224.1
      UniProtKB/Swiss-Prot
      Q810Q5
      UniProtKB/TrEMBL
      A2AK37, Q3UCF3
      Related
      ENSMUSP00000040781.9, ENSMUST00000047498.15
      Conserved Domains (1) summary
      pfam06522
      Location:9 → 76
      B12D; NADH-ubiquinone reductase complex 1 MLRQ subunit

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000068.8 Reference GRCm39 C57BL/6J

      Range
      122479807..122482996
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q810Q5.1 GenPept UniProtKB/Swiss-Prot:Q810Q5

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools
    Miscellaneous