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    cog5 component of oligomeric golgi complex 5 [ Danio rerio (zebrafish) ]

    Gene ID: 567886, updated on 27-Mar-2024

    Summary

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    Official Symbol
    cog5provided by ZNC
    Official Full Name
    component of oligomeric golgi complex 5provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-041210-47
    See related
    Ensembl:ENSDARG00000008235 AllianceGenome:ZFIN:ZDB-GENE-041210-47
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    si:dkey-217k21.3
    Summary
    Predicted to be involved in intra-Golgi vesicle-mediated transport. Predicted to be located in Golgi apparatus and membrane. Predicted to be part of Golgi transport complex. Human ortholog(s) of this gene implicated in congenital disorder of glycosylation type IIi. Orthologous to human COG5 (component of oligomeric golgi complex 5). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    human mouse all
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    Genomic context

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    See cog5 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 4 NC_007115.7 (2548783..2637728, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 4 NC_007115.6 (2618672..2707617, complement)

    Chromosome 4 - NC_007115.7Genomic Context describing neighboring genes Neighboring gene cysteine and glycine-rich protein 2 Neighboring gene E2F transcription factor 7 Neighboring gene G protein-coupled receptor 22a Neighboring gene dihydrouridine synthase 4-like (S. cerevisiae) Neighboring gene B cell receptor associated protein 29

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. 15000 unique zebrafish EST clusters and their future use in microarray for profiling gene expression patterns during embryogenesis. Lo J, et al. Genome Res, 2003 Mar. PMID 12618376, Free PMC Article
    2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC162012

    Gene Ontology Provided by ZFIN

    Process Evidence Code Pubs
    involved_in intra-Golgi vesicle-mediated transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    acts_upstream_of_or_within intra-Golgi vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of Golgi transport complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of Golgi transport complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    conserved oligomeric Golgi complex subunit 5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001045144.1 → NP_001038609.1  conserved oligomeric Golgi complex subunit 5

      Status: PROVISIONAL

      Source sequence(s)
      BX072538
      UniProtKB/TrEMBL
      A0A2R8RQB0, A0A8M1NA26
      Related
      ENSDARP00000150497.1, ENSDART00000192550.1
      Conserved Domains (1) summary
      pfam10392
      Location:19 → 142
      COG5; Golgi transport complex subunit 5

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007115.7 Reference GRCz11 Primary Assembly

      Range
      2548783..2637728 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005164473.3 → XP_005164530.1  conserved oligomeric Golgi complex subunit 5 isoform X1

      UniProtKB/TrEMBL
      A0A8M2BBN4, F6NMG5
      Related
      ENSDARP00000019903.9, ENSDART00000021953.11
      Conserved Domains (1) summary
      pfam10392
      Location:19 → 142
      COG5; Golgi transport complex subunit 5
    Nucleotide Protein Strain
    Heading Accession and Version

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