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    1110038F14Rik RIKEN cDNA 1110038F14 gene [ Mus musculus (house mouse) ]

    Gene ID: 117171, updated on 5-Mar-2024

    Summary

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    Official Symbol
    1110038F14Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 1110038F14 geneprovided by MGI
    Primary source
    MGI:MGI:2152337
    See related
    Ensembl:ENSMUSG00000063236 AllianceGenome:MGI:2152337
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Orthologous to human C8orf33 (chromosome 8 open reading frame 33). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Ubiquitous expression in CNS E11.5 (RPKM 16.4), limb E14.5 (RPKM 13.1) and 28 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See 1110038F14Rik in Genome Data Viewer
    Location:
    15 D3; 15 36.3 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 15 NC_000081.7 (76832453..76835179)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 15 NC_000081.6 (76948251..76950979)

    Chromosome 15 - NC_000081.7Genomic Context describing neighboring genes Neighboring gene zinc finger protein 647 Neighboring gene zinc finger protein 113 pseudogene Neighboring gene predicted gene, 46534 Neighboring gene STARR-seq mESC enhancer starr_39068 Neighboring gene STARR-seq mESC enhancer starr_39069 Neighboring gene predicted gene, 35933 Neighboring gene predicted gene, 53916

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Libraries enriched for alternatively spliced exons reveal splicing patterns in melanocytes and melanomas. Watahiki A, et al. Nat Methods, 2004 Dec. PMID 15782199
    2. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
    3. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
    4. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    5. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    UPF0488 protein C8orf33 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001347540.1 → NP_001334469.1  UPF0488 protein C8orf33 homolog isoform 1

      Status: VALIDATED

      Source sequence(s)
      AC157554, AK141496, AK153059
      Consensus CDS
      CCDS84175.1
      UniProtKB/Swiss-Prot
      Q3U6N9, Q3URI5, Q9D0Z5
      Related
      ENSMUSP00000071698.6, ENSMUST00000071792.7

    2. NM_054099.3 → NP_473440.1  UPF0488 protein C8orf33 homolog isoform 2

      See identical proteins and their annotated locations for NP_473440.1

      Status: VALIDATED

      Source sequence(s)
      AK141496, BC038324, BY090286
      Consensus CDS
      CCDS88794.1
      UniProtKB/Swiss-Prot
      Q3U6N9
      Related
      ENSMUSP00000154907.2, ENSMUST00000230274.2
      Conserved Domains (1) summary
      pfam15393
      Location:40 → 159
      DUF4615; Domain of unknown function (DUF4615)

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000081.7 Reference GRCm39 C57BL/6J

      Range
      76832453..76835179
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_003951346.2 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q3U6N9.1 GenPept UniProtKB/Swiss-Prot:Q3U6N9

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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