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    Ankrd55 ankyrin repeat domain 55 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 361898, updated on 2-May-2024

    Summary

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    Official Symbol
    Ankrd55provided by RGD
    Official Full Name
    ankyrin repeat domain 55provided by RGD
    Primary source
    RGD:1307735
    See related
    Ensembl:ENSRNOG00000013555 AllianceGenome:RGD:1307735
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1307735
    Summary
    Orthologous to human ANKRD55 (ankyrin repeat domain 55). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Testes (RPKM 21.8), Brain (RPKM 20.9) and 5 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Ankrd55 in Genome Data Viewer
    Location:
    2q14
    Exon count:
    23
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 2 NC_086020.1 (45617011..45717086)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 2 NC_051337.1 (43883877..43983820)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 2 NC_005101.4 (43819234..44196602)

    Chromosome 2 - NC_086020.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134485837 Neighboring gene uncharacterized LOC102554307 Neighboring gene uncharacterized LOC103691456 Neighboring gene uncharacterized LOC120100706 Neighboring gene U6 spliceosomal RNA Neighboring gene uncharacterized LOC134485838 Neighboring gene interleukin 6 cytokine family signal transducer

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Rat Mcs1b is concordant to the genome-wide association-identified breast cancer risk locus at human 5q11.2 and MIER3 is a candidate cancer susceptibility gene. denDekker AD, et al. Cancer Res, 2012 Nov 15. PMID 22993404, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    ankyrin repeat domain-containing protein 55

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001270039.1 → NP_001256968.1  ankyrin repeat domain-containing protein 55

      See identical proteins and their annotated locations for NP_001256968.1

      Status: PROVISIONAL

      Source sequence(s)
      JQ013731
      UniProtKB/TrEMBL
      H9BFG5
      Related
      ENSRNOP00000095577.1, ENSRNOT00000098621.1
      Conserved Domains (2) summary
      PHA03095
      Location:3 → 286
      PHA03095; ankyrin-like protein; Provisional
      sd00045
      Location:64 → 95
      ANK; ANK repeat [structural motif]

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086020.1 Reference GRCr8

      Range
      45617011..45717086
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039102572.2 → XP_038958500.2  ankyrin repeat domain-containing protein 55 isoform X11

    2. XM_006231940.5 → XP_006232002.1  ankyrin repeat domain-containing protein 55 isoform X1

      UniProtKB/TrEMBL
      F1M1X7
      Related
      ENSRNOP00000018438.6
      Conserved Domains (4) summary
      cd00204
      Location:121 → 250
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam12796
      Location:98 → 192
      Ank_2; Ankyrin repeats (3 copies)
      pfam13637
      Location:197 → 250
      Ank_4; Ankyrin repeats (many copies)
      sd00045
      Location:93 → 124
      ANK; ANK repeat [structural motif]

    3. XM_039102573.2 → XP_038958501.1  ankyrin repeat domain-containing protein 55 isoform X12

      Conserved Domains (2) summary
      sd00045
      Location:60 → 91
      ANK; ANK repeat [structural motif]
      pfam12796
      Location:65 → 159
      Ank_2; Ankyrin repeats (3 copies)

    4. XM_063282033.1 → XP_063138103.1  ankyrin repeat domain-containing protein 55 isoform X4

      UniProtKB/TrEMBL
      A0A8I6AJZ0

    5. XM_063282034.1 → XP_063138104.1  ankyrin repeat domain-containing protein 55 isoform X4

      UniProtKB/TrEMBL
      A0A8I6AJZ0

    6. XM_039102558.2 → XP_038958486.1  ankyrin repeat domain-containing protein 55 isoform X2

      Conserved Domains (2) summary
      PHA03095
      Location:4 → 298
      PHA03095; ankyrin-like protein; Provisional
      sd00045
      Location:76 → 107
      ANK; ANK repeat [structural motif]

    7. XM_039102563.2 → XP_038958491.1  ankyrin repeat domain-containing protein 55 isoform X4

      UniProtKB/TrEMBL
      A0A8I6AJZ0
      Conserved Domains (2) summary
      PHA03095
      Location:3 → 286
      PHA03095; ankyrin-like protein; Provisional
      sd00045
      Location:64 → 95
      ANK; ANK repeat [structural motif]

    8. XM_039102560.2 → XP_038958488.1  ankyrin repeat domain-containing protein 55 isoform X4

      UniProtKB/TrEMBL
      A0A8I6AJZ0
      Conserved Domains (2) summary
      PHA03095
      Location:3 → 286
      PHA03095; ankyrin-like protein; Provisional
      sd00045
      Location:64 → 95
      ANK; ANK repeat [structural motif]

    9. XM_039102561.2 → XP_038958489.1  ankyrin repeat domain-containing protein 55 isoform X4

      UniProtKB/TrEMBL
      A0A8I6AJZ0
      Conserved Domains (2) summary
      PHA03095
      Location:3 → 286
      PHA03095; ankyrin-like protein; Provisional
      sd00045
      Location:64 → 95
      ANK; ANK repeat [structural motif]

    10. XM_039102565.2 → XP_038958493.1  ankyrin repeat domain-containing protein 55 isoform X4

      UniProtKB/TrEMBL
      A0A8I6AJZ0
      Conserved Domains (2) summary
      PHA03095
      Location:3 → 286
      PHA03095; ankyrin-like protein; Provisional
      sd00045
      Location:64 → 95
      ANK; ANK repeat [structural motif]

    11. XM_039102562.2 → XP_038958490.1  ankyrin repeat domain-containing protein 55 isoform X4

      UniProtKB/TrEMBL
      A0A8I6AJZ0
      Conserved Domains (2) summary
      PHA03095
      Location:3 → 286
      PHA03095; ankyrin-like protein; Provisional
      sd00045
      Location:64 → 95
      ANK; ANK repeat [structural motif]

    12. XM_039102559.2 → XP_038958487.1  ankyrin repeat domain-containing protein 55 isoform X3

      Conserved Domains (2) summary
      PHA03095
      Location:3 → 297
      PHA03095; ankyrin-like protein; Provisional
      sd00045
      Location:75 → 106
      ANK; ANK repeat [structural motif]

    13. XM_039102566.1 → XP_038958494.1  ankyrin repeat domain-containing protein 55 isoform X5

      Conserved Domains (2) summary
      PHA03095
      Location:3 → 286
      PHA03095; ankyrin-like protein; Provisional
      sd00045
      Location:64 → 95
      ANK; ANK repeat [structural motif]

    14. XM_039102571.1 → XP_038958499.1  ankyrin repeat domain-containing protein 55 isoform X10

      Conserved Domains (2) summary
      PHA03095
      Location:3 → 286
      PHA03095; ankyrin-like protein; Provisional
      sd00045
      Location:64 → 95
      ANK; ANK repeat [structural motif]

    15. XM_039102570.2 → XP_038958498.1  ankyrin repeat domain-containing protein 55 isoform X9

      Conserved Domains (2) summary
      COG0666
      Location:21 → 165
      ANKYR; Ankyrin repeat [Signal transduction mechanisms]
      sd00045
      Location:28 → 59
      ANK; ANK repeat [structural motif]

    16. XM_039102569.2 → XP_038958497.1  ankyrin repeat domain-containing protein 55 isoform X8

      Conserved Domains (2) summary
      COG0666
      Location:27 → 171
      ANKYR; Ankyrin repeat [Signal transduction mechanisms]
      sd00045
      Location:34 → 65
      ANK; ANK repeat [structural motif]

    17. XM_039102568.2 → XP_038958496.1  ankyrin repeat domain-containing protein 55 isoform X7

      Conserved Domains (2) summary
      COG0666
      Location:40 → 184
      ANKYR; Ankyrin repeat [Signal transduction mechanisms]
      sd00045
      Location:47 → 78
      ANK; ANK repeat [structural motif]

    18. XM_039102567.2 → XP_038958495.1  ankyrin repeat domain-containing protein 55 isoform X6

      Conserved Domains (2) summary
      COG0666
      Location:47 → 191
      ANKYR; Ankyrin repeat [Signal transduction mechanisms]
      sd00045
      Location:54 → 85
      ANK; ANK repeat [structural motif]

    RNA

    1. XR_005500312.2 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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