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    Smarca5-ps SWI/SNF related, matrix associated, actin depenent ragulator of chromatin, subfamily a, member 5, pseudogene [ Mus musculus (house mouse) ]

    Gene ID: 545700, updated on 8-Feb-2024

    Summary

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    Official Symbol
    Smarca5-psprovided by MGI
    Official Full Name
    SWI/SNF related, matrix associated, actin depenent ragulator of chromatin, subfamily a, member 5, pseudogeneprovided by MGI
    Primary source
    MGI:MGI:2443330
    See related
    Ensembl:ENSMUSG00000052912 AllianceGenome:MGI:2443330
    Gene type
    pseudo
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    9230115A19Rik
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    Genomic context

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    See Smarca5-ps in Genome Data Viewer
    Location:
    4 E1; 4 78.2 cM
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (145190780..145194531)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (145464210..145467961)

    Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_12024 Neighboring gene predicted gene, 42346 Neighboring gene STARR-seq mESC enhancer starr_12025 Neighboring gene STARR-positive B cell enhancer ABC_E9609 Neighboring gene STARR-positive B cell enhancer ABC_E2132 Neighboring gene STARR-positive B cell enhancer mm9_chr4:145039173-145039474 Neighboring gene STARR-positive B cell enhancer mm9_chr4:145043961-145044261 Neighboring gene STARR-seq mESC enhancer starr_12026 Neighboring gene carnitine deficiency-associated gene expressed in ventricle 3 pseudogene Neighboring gene 60S acidic ribosomal protein P1 pseudogene Neighboring gene STARR-seq mESC enhancer starr_12028 Neighboring gene STARR-seq mESC enhancer starr_12029 Neighboring gene STARR-seq mESC enhancer starr_12030 Neighboring gene zinc finger protein 990

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. V2R gene families degenerated in primates, dog and cow, but expanded in opossum. Young JM, et al. Trends Genet, 2007 May. PMID 17382427
    2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Other Names

    • SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 pseudogene

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_002888.2 RNA Sequence

      Status: PROVISIONAL

      Source sequence(s)
      AL606963
      Related
      ENSMUST00000121843.2

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000070.7 Reference GRCm39 C57BL/6J

      Range
      145190780..145194531
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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