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    Pramel27 PRAME like 27 [ Mus musculus (house mouse) ]

    Gene ID: 194225, updated on 8-Feb-2024

    Summary

    Official Symbol
    Pramel27provided by MGI
    Official Full Name
    PRAME like 27provided by MGI
    Primary source
    MGI:MGI:3650203
    See related
    Ensembl:ENSMUSG00000029451 AllianceGenome:MGI:3650203
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm13103; E330017N17
    Summary
    Predicted to enable ubiquitin ligase-substrate adaptor activity. Predicted to be part of Cul2-RING ubiquitin ligase complex. Predicted to be active in cytoplasm. Orthologous to several human genes including PRAMEF1 (PRAME family member 1); PRAMEF10 (PRAME family member 10); and PRAMEF11 (PRAME family member 11). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See Pramel27 in Genome Data Viewer
    Location:
    4 E1; 4 77.98 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (143573067..143580207)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (143846497..143853637)

    Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene PRAME like 25 Neighboring gene PRAME like 26 Neighboring gene STARR-seq mESC enhancer starr_11975 Neighboring gene STARR-seq mESC enhancer starr_11976 Neighboring gene PRAME like 11 Neighboring gene oogenesin 2 pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_177571.3NP_808239.2  PRAME like 27

      See identical proteins and their annotated locations for NP_808239.2

      Status: VALIDATED

      Source sequence(s)
      BB555205, BC096438, BY029530, DV662991
      Consensus CDS
      CCDS38949.1
      UniProtKB/TrEMBL
      Q4VAD2
      Related
      ENSMUSP00000092099.2, ENSMUST00000094522.8

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000070.7 Reference GRCm39 C57BL/6J

      Range
      143573067..143580207
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_030253367.1XP_030109227.1  PRAME like 27 isoform X1

      UniProtKB/TrEMBL
      A6PWA2
      Related
      ENSMUSP00000101394.2, ENSMUST00000105768.2