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    ap3m1 adaptor related protein complex 3 subunit mu 1 [ Danio rerio (zebrafish) ]

    Gene ID: 266798, updated on 25-Apr-2024

    Summary

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    Official Symbol
    ap3m1provided by ZNC
    Official Full Name
    adaptor related protein complex 3 subunit mu 1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-021015-2
    See related
    Ensembl:ENSDARG00000029928 AllianceGenome:ZFIN:ZDB-GENE-021015-2
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    cb430
    Summary
    Predicted to be involved in endocytosis. Predicted to act upstream of or within protein transport. Predicted to be located in Golgi apparatus and cytoplasmic vesicle membrane. Predicted to be part of clathrin adaptor complex. Predicted to be active in cytoplasmic vesicle. Is expressed in several structures, including digestive system; polster; pronephric duct; solid lens vesicle; and yolk syncytial layer. Orthologous to human AP3M1 (adaptor related protein complex 3 subunit mu 1). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    all
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    Genomic context

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    See ap3m1 in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 13 NC_007124.7 (25200036..25209082)
    105 previous assembly GRCz10 (GCF_000002035.5) 13 NC_007124.6 (25069604..25078622)

    Chromosome 13 - NC_007124.7Genomic Context describing neighboring genes Neighboring gene K(lysine) acetyltransferase 6B Neighboring gene adenosine kinase a Neighboring gene vinculin a Neighboring gene plasminogen activator, urokinase a

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Genetic characterization and in vivo image analysis of novel zebrafish Danio rerio pigment mutants. Hsu CC, et al. J Fish Biol, 2013 May. PMID 23639161
    2. Hematopoietic gene expression profile in zebrafish kidney marrow. Song HD, et al. Proc Natl Acad Sci U S A, 2004 Nov 16. PMID 15520368, Free PMC Article
    3. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
    4. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Process Evidence Code Pubs
    involved_in endocytosis IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    acts_upstream_of_or_within intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within protein transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of clathrin adaptor complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in cytoplasmic vesicle IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    AP-3 complex subunit mu-1
    Names
    adaptor-related protein complex 3, mu 1 subunit

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_201292.1 → NP_958449.1  AP-3 complex subunit mu-1

      See identical proteins and their annotated locations for NP_958449.1

      Status: PROVISIONAL

      Source sequence(s)
      AY394946
      UniProtKB/TrEMBL
      Q6TLF9
      Related
      ENSDARP00000039639.5, ENSDART00000039640.6
      Conserved Domains (2) summary
      cl02092
      Location:1 → 133
      Clat_adaptor_s; Clathrin adaptor complex small chain
      cl10970
      Location:165 → 421
      AP_MHD_Cterm; C-terminal domain of adaptor protein (AP) complexes medium mu subunits and its homologs (MHD)

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007124.7 Reference GRCz11 Primary Assembly

      Range
      25200036..25209082
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009307281.3 → XP_009305556.1  AP-3 complex subunit mu-1 isoform X1

      See identical proteins and their annotated locations for XP_009305556.1

      UniProtKB/TrEMBL
      A0A8M3B573, A9JRS9
      Conserved Domains (2) summary
      cl02092
      Location:1 → 133
      Clat_adaptor_s; Clathrin adaptor complex small chain
      cl10970
      Location:165 → 421
      AP_MHD_Cterm; C-terminal domain of adaptor protein (AP) complexes medium mu subunits and its homologs (MHD)

    2. XM_021480492.1 → XP_021336167.1  AP-3 complex subunit mu-1 isoform X1

      UniProtKB/TrEMBL
      A0A8M3B573, A9JRS9
      Conserved Domains (2) summary
      cl02092
      Location:1 → 133
      Clat_adaptor_s; Clathrin adaptor complex small chain
      cl10970
      Location:165 → 421
      AP_MHD_Cterm; C-terminal domain of adaptor protein (AP) complexes medium mu subunits and its homologs (MHD)
    Nucleotide Protein Strain
    Heading Accession and Version

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