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    1500002F19Rik RIKEN cDNA 1500002F19 gene [ Mus musculus (house mouse) ]

    Gene ID: 76683, updated on 8-Feb-2024

    Summary

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    Official Symbol
    1500002F19Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 1500002F19 geneprovided by MGI
    Primary source
    MGI:MGI:1923933
    See related
    AllianceGenome:MGI:1923933
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Acts upstream of or within response to bacterium. [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Ubiquitous expression in testis adult (RPKM 1.0), CNS E11.5 (RPKM 0.9) and 28 other tissues See more
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    Genomic context

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    See 1500002F19Rik in Genome Data Viewer
    Location:
    7 F3; 7 76.32 cM
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (132476343..132535739, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (132874614..132934010, complement)

    Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E8216 Neighboring gene STARR-positive B cell enhancer mm9_chr7:139848293-139848593 Neighboring gene phospholysine phosphohistidine inorganic pyrophosphate phosphatase Neighboring gene STARR-seq mESC enhancer starr_20301 Neighboring gene STARR-seq mESC enhancer starr_20302 Neighboring gene family with sequence similarity 53, member B Neighboring gene EEF1A lysine methyltransferase 2 Neighboring gene CapStarr-seq enhancer MGSCv37_chr7:140044265-140044448 Neighboring gene CapStarr-seq enhancer MGSCv37_chr7:140050715-140050898 Neighboring gene BRISC complex subunit Neighboring gene STARR-seq mESC enhancer starr_20305 Neighboring gene STARR-positive B cell enhancer ABC_E3759 Neighboring gene predicted gene, 46003 Neighboring gene predicted gene 45502 Neighboring gene zinc finger, RAN-binding domain containing 1 Neighboring gene RIKEN cDNA 4932437C15 gene Neighboring gene STARR-seq mESC enhancer starr_20308 Neighboring gene C-terminal binding protein 2 Neighboring gene STARR-seq mESC enhancer starr_20317 Neighboring gene STARR-seq mESC enhancer starr_20324 Neighboring gene STARR-seq mESC enhancer starr_20325 Neighboring gene predicted gene, 35364

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Impact of lactobacilli on orally acquired listeriosis. Archambaud C, et al. Proc Natl Acad Sci U S A, 2012 Oct 9. PMID 23012479, Free PMC Article
    2. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
    3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Clone Names

    • MGC7427

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within response to bacterium IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000073.7 Reference GRCm39 C57BL/6J

      Range
      132476343..132535739 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_003946678.1 RNA Sequence

    2. XR_870008.4 RNA Sequence

    3. XR_003946681.1 RNA Sequence

    4. XR_003946680.1 RNA Sequence

    5. XR_003946679.2 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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